From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Mon, 1 Feb 2016 12:54:13 +0000 (+0000)
Subject: JAL-1705 set Uniprot xref as 'source dbref' (for SIFTS mapping)
X-Git-Tag: Release_2_10_0~296^2~42
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;ds=sidebyside;h=3e3c9f8a78a2f8378b01b68900d9efb4ab95c7e6;p=jalview.git

JAL-1705 set Uniprot xref as 'source dbref' (for SIFTS mapping)
---

diff --git a/src/jalview/ext/ensembl/EnsemblSeqProxy.java b/src/jalview/ext/ensembl/EnsemblSeqProxy.java
index 744aa49..8c1e972 100644
--- a/src/jalview/ext/ensembl/EnsemblSeqProxy.java
+++ b/src/jalview/ext/ensembl/EnsemblSeqProxy.java
@@ -312,6 +312,13 @@ public abstract class EnsemblSeqProxy extends EnsemblRestClient
     for (DBRefEntry xref : xrefs)
     {
       seq.addDBRef(xref);
+      /*
+       * Save any Uniprot xref to be the reference for SIFTS mapping
+       */
+      if (DBRefSource.UNIPROT.equals(xref.getSource()))
+      {
+        seq.setSourceDBRef(xref);
+      }
     }
   }