From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Fri, 3 Aug 2012 16:24:02 +0000 (+0100)
Subject: JAL-1136 store ws-parameter list as XML element content after first escaping newlines... 
X-Git-Tag: Jalview_2_9~407
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;ds=sidebyside;h=4be05f596362591c5758f2f7a6552956f692ca3b;p=jalview.git

JAL-1136 store ws-parameter list as XML element content after first escaping newlines. TODO: consider revising
---

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index d9aca36..08deba4 100644
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -1306,7 +1306,7 @@ public class Jalview2XML
       // recreate settings from preset 3) predefined settings provided by
       // service - or settings that can be transferred (or discarded)
       vCalcIdParam.setParameters(settings
-              .getWsParamFile());
+              .getWsParamFile().replace("\n", "|\\n|"));
       vCalcIdParam.setAutoUpdate(settings.isAutoUpdate());
       // todo - decide if updateImmediately is needed for any projects.
 
@@ -1325,7 +1325,7 @@ public class Jalview2XML
       {
         WsParamSetI parmSet=null;
         try {
-          service.getParamStore().parseServiceParameterFile(calcIdParam.getName(), calcIdParam.getDescription(), calcIdParam.getServiceURL(), calcIdParam.getParameters());
+          parmSet = service.getParamStore().parseServiceParameterFile(calcIdParam.getName(), calcIdParam.getDescription(), calcIdParam.getServiceURL(), calcIdParam.getParameters().replace("|\\n|", "\n"));
         } catch (IOException x)
         {
           warn("Couldn't parse parameter data for "+calcIdParam.getCalcId(), x);