From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 15 Nov 2006 16:43:21 +0000 (+0000)
Subject: dont adjust aligments if they're the same size
X-Git-Tag: Release_2_2~108
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;ds=sidebyside;h=6e52c3f5f6679026d2adccab3dc15e90faebf8f7;p=jalview.git

dont adjust aligments if they're the same size
---

diff --git a/src/jalview/appletgui/PaintRefresher.java b/src/jalview/appletgui/PaintRefresher.java
index 322466b..1195210 100755
--- a/src/jalview/appletgui/PaintRefresher.java
+++ b/src/jalview/appletgui/PaintRefresher.java
@@ -147,6 +147,10 @@ public class PaintRefresher
         a2 = comp.getSequencesArray();
 
       int i, iSize=a1.length, j, jSize=a2.length;
+
+      if(iSize == jSize)
+        return;
+
       boolean exists = false;
       for(i=0; i<iSize; i++)
       {
diff --git a/src/jalview/gui/PaintRefresher.java b/src/jalview/gui/PaintRefresher.java
index 1def794..de1d5d8 100755
--- a/src/jalview/gui/PaintRefresher.java
+++ b/src/jalview/gui/PaintRefresher.java
@@ -147,6 +147,10 @@ public class PaintRefresher
         a2 = comp.getSequencesArray();
 
       int i, iSize=a1.length, j, jSize=a2.length;
+
+      if(iSize == jSize)
+        return;
+
       boolean exists = false;
       for(i=0; i<iSize; i++)
       {