From: gmungoc Date: Fri, 26 Apr 2019 13:52:30 +0000 (+0100) Subject: JAL-2738 JAL-2743 properties to map VCF header to species or assembly X-Git-Tag: Release_2_11_0~17^2^2~2 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;ds=sidebyside;h=873061987e0feabe7be4ead7c1767840f1e60723;p=jalview.git JAL-2738 JAL-2743 properties to map VCF header to species or assembly --- diff --git a/src/jalview/io/vcf/VCFLoader.java b/src/jalview/io/vcf/VCFLoader.java index 5ba5d93..f4ce1a3 100644 --- a/src/jalview/io/vcf/VCFLoader.java +++ b/src/jalview/io/vcf/VCFLoader.java @@ -51,6 +51,8 @@ import htsjdk.variant.vcf.VCFInfoHeaderLine; */ public class VCFLoader { + private static final String DEFAULT_SPECIES = "homo_sapiens"; + /** * A class to model the mapping from sequence to VCF coordinates. Cases include *