From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Mon, 21 Oct 2013 22:10:54 +0000 (+0000)
Subject: inprogress
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;ds=sidebyside;h=dfa1002fd1d763930cf4502359fc19f4066c494e;p=jalview.git

inprogress
---

diff --git a/forester/ruby/scripts/g.rb b/forester/ruby/scripts/g.rb
index a4ccd52..c8e367b 100644
--- a/forester/ruby/scripts/g.rb
+++ b/forester/ruby/scripts/g.rb
@@ -1,4 +1,4 @@
-File.open( "g" ) do | file |
+File.open( "g.txt" ) do | file |
   while line = file.gets
     if line =~ /^([A-Z0-9]{3,5})/
       puts "/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/" + $1 + ".hmmscan    " + $1
diff --git a/forester/ruby/scripts/gl.rb b/forester/ruby/scripts/gl.rb
index ebb99a9..e4cf9e8 100644
--- a/forester/ruby/scripts/gl.rb
+++ b/forester/ruby/scripts/gl.rb
@@ -1,4 +1,4 @@
-File.open( "gl.txt" ) do | file |
+File.open( "g.txt" ) do | file |
   while line = file.gets
     if line =~ /^([A-Z0-9]{3,5})/
       puts $1 + "\t" + "/home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/" + $1 + ".fasta"