From: Jim Procter <jprocter@issues.jalview.org>
Date: Tue, 26 Apr 2016 16:33:02 +0000 (+0100)
Subject: JAL-2079 use new service to retrieve Rfam Seed alignment
X-Git-Tag: Release_2_10_0~235^2~7
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;ds=sidebyside;h=f139e5531defcf77c8c8641ffb6e730e406528d6;p=jalview.git

JAL-2079 use new service to retrieve Rfam Seed alignment
---

diff --git a/src/jalview/ws/dbsources/RfamSeed.java b/src/jalview/ws/dbsources/RfamSeed.java
index c7851f2..77fb841 100644
--- a/src/jalview/ws/dbsources/RfamSeed.java
+++ b/src/jalview/ws/dbsources/RfamSeed.java
@@ -42,11 +42,16 @@ public class RfamSeed extends Rfam
   @Override
   protected String getXFAMURL()
   {
-    return "http://rfam.xfam.org/family/alignment/download/format?alnType=seed&nseLabels=0&format=stockholm&acc=";
+    return "http://rfam.xfam.org/family/";
     // Janelia Farms url
     // "http://rfam.janelia.org/cgi-bin/getalignment?type=seed&fmt=stockholm&acc=";
   }
 
+  @Override
+  public String getXFAMURLSUFFIX()
+  {
+    return "/alignment";
+  }
   /*
    * (non-Javadoc)
    *