From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Fri, 20 Sep 2013 21:51:07 +0000 (+0000)
Subject: inprogress
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=0069935886035095ac65f8355092825d6e91cdad;p=jalview.git

inprogress
---

diff --git a/forester/ruby/evoruby/lib/evo/tool/domain_sequence_extractor.rb b/forester/ruby/evoruby/lib/evo/tool/domain_sequence_extractor.rb
index efe6f6a..5c8619d 100644
--- a/forester/ruby/evoruby/lib/evo/tool/domain_sequence_extractor.rb
+++ b/forester/ruby/evoruby/lib/evo/tool/domain_sequence_extractor.rb
@@ -254,7 +254,7 @@ module Evoruby
       puts()
       puts( "  " + PRG_NAME + ".rb [options] <domain> <hmmscan outputfile> <file containing complete sequences in fasta format> <outputfile>" )
       puts()
-      puts( "  options: -" + E_VALUE_THRESHOLD_OPTION  + "=<f>: E-value threshold, default is no threshold" )
+      puts( "  options: -" + E_VALUE_THRESHOLD_OPTION  + "=<f>: iE-value threshold, default is no threshold" )
       puts( "           -" + LENGTH_THRESHOLD_OPTION   + "=<i>: length threshold, default is no threshold" )
       puts( "           -" + ADD_POSITION_OPTION  + ": to add positions (rel to complete seq) to extracted domains" )
       puts( "           -" + ADD_DOMAIN_NUMBER_OPTION  + ": to add numbers to extracted domains (in case of more than one domain per complete seq) (example \"domain~2-3\")" )