From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Thu, 27 Aug 2015 15:50:06 +0000 (+0100)
Subject: JAL-1270 comments added regarding required remote service
X-Git-Tag: Jalview_2_9~10^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=02059a2675d81af6de5f8d54a7a1e4db94351365;p=jalview.git

JAL-1270 comments added regarding required remote service
---

diff --git a/test/jalview/ws/PDBSequenceFetcherTest.java b/test/jalview/ws/PDBSequenceFetcherTest.java
index 86439fc..adf53f5 100644
--- a/test/jalview/ws/PDBSequenceFetcherTest.java
+++ b/test/jalview/ws/PDBSequenceFetcherTest.java
@@ -49,6 +49,14 @@ public class PDBSequenceFetcherTest
     sf = new SequenceFetcher(false);
   }
 
+  /**
+   * Test that RNA structure can be added by a call to the RNAML service.
+   * 
+   * Note this test depends on http://arn-ibmc.in2p3.fr/api/compute/2d which is
+   * not always reliable.
+   * 
+   * @throws Exception
+   */
   @Test(groups =
   { "Network" }, enabled = true)
   public void testRnaSeqRetrieve() throws Exception
@@ -62,7 +70,9 @@ public class PDBSequenceFetcherTest
       assertTrue("No annotation transfered to sequence.",
               sq.getAnnotation().length > 0);
       assertTrue("No PDBEntry on sequence.", sq.getAllPDBEntries().size() > 0);
-      assertTrue("No RNA annotation on sequence.", sq.getRNA() != null);
+      assertTrue(
+              "No RNA annotation on sequence, possibly http://arn-ibmc.in2p3.fr/api/compute/2d not available?",
+              sq.getRNA() != null);
     }
   }