From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Sat, 29 Sep 2012 05:12:32 +0000 (+0000)
Subject: in progress
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=0217958a797b6789dee8fabadaee2ca30719fb9b;p=jalview.git

in progress
---

diff --git a/forester/ruby/evoruby/lib/evo/io/parser/hmmscan_domain_extractor.rb b/forester/ruby/evoruby/lib/evo/io/parser/hmmscan_domain_extractor.rb
index 8c66f42..6abdc23 100644
--- a/forester/ruby/evoruby/lib/evo/io/parser/hmmscan_domain_extractor.rb
+++ b/forester/ruby/evoruby/lib/evo/io/parser/hmmscan_domain_extractor.rb
@@ -141,10 +141,10 @@ module Evoruby
 
                   if out_of == 1
 
-                    if rev_sequence && sequence == prev_sequence
-                      puts "sequence == prev_sequence && out_of == 1"
-                      exit
-                    end
+                  #  if prev_sequence && sequence == prev_sequence
+                  #    puts "sequence == prev_sequence && out_of == 1"
+                  #    exit
+                  #  end
                     extract_domain( sequence,
                       number,
                       out_of,