From: Jim Procter <jprocter@issues.jalview.org>
Date: Mon, 3 Oct 2016 08:17:05 +0000 (+0100)
Subject: JAL-2210 hack to remove EMBL from Protein crossrefs, and ENSEMBL from CDS crossers.
X-Git-Tag: Release_2_10_0~20^2~9
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=0463fb03eb6a32ce4d39ab7c146b82549c5a5e0e;p=jalview.git

JAL-2210 hack to remove EMBL from Protein crossrefs, and ENSEMBL from CDS crossers.
---

diff --git a/src/jalview/analysis/CrossRef.java b/src/jalview/analysis/CrossRef.java
index 59ba8a3..cd71bbd 100644
--- a/src/jalview/analysis/CrossRef.java
+++ b/src/jalview/analysis/CrossRef.java
@@ -24,6 +24,7 @@ import jalview.datamodel.AlignedCodonFrame;
 import jalview.datamodel.Alignment;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.DBRefEntry;
+import jalview.datamodel.DBRefSource;
 import jalview.datamodel.Mapping;
 import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceFeature;
@@ -106,6 +107,16 @@ public class CrossRef
         findXrefSourcesForSequence(seq, dna, sources);
       }
     }
+    sources.remove(DBRefSource.EMBL); // hack to prevent EMBL xrefs resulting in
+                                      // redundant datasets
+    if (dna)
+    {
+      sources.remove(DBRefSource.ENSEMBL); // hack to prevent Ensembl and
+                                           // EnsemblGenomes xref option shown
+                                           // from cdna panel
+      sources.remove(DBRefSource.ENSEMBLGENOMES);
+    }
+    // redundant datasets
     return sources;
   }