From: Jim Procter <jprocter@issues.jalview.org>
Date: Fri, 16 Sep 2016 15:32:30 +0000 (+0100)
Subject: JAL-2089 release notes
X-Git-Tag: Release_2_10_0~20^2~43
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=04cc755a023a86c4a21c27bfbf17cee869635929;p=jalview.git

JAL-2089 release notes
---

diff --git a/help/html/releases.html b/help/html/releases.html
index 3c7c0c0..0837cb0 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -52,8 +52,9 @@
       </td>
       <td><em>General</em>
         <ul>
-            <li><!-- JAL---></li>
+            <li><!-- JAL-2164,JAL-1919,-->Jmol now primary parser for importing structure data to Jalview. Enables mmCIF and better PDB parsing.</li>
             <li><!-- JAL-192 --->Alignment ruler shows positions relative to reference sequence</li>
+            <li><!-- JAL-2202 -->Position/residue shown in status bar when mousing over sequence associated annotation</li>
         </ul> <em>Application</em>
         <ul>
             <li><!-- JAL---></li>
@@ -68,6 +69,10 @@
             <li><!--  JAL 1812 -->New 'execute Groovy script' option in an alignment window's Calculate menu</li>
             <li><!--  JAL 1812 -->Allow groovy scripts that call Jalview.getAlignFrames() to run in headless mode</li>
             <li><!-- JAL-1369 --->Store/restore reference sequence in Jalview projects</li>
+            <li><!-- JAL-1803-->Chain codes for a sequence's PDB associations are now saved/restored from project</li>
+            <li><!-- JAL-2183-->Double click on an entry in Jalview's database chooser opens a sequence fetcher</li>
+            <li><!-- JAL-2183-->Free-text search client for UniProt using the UniProt web API</li>
+            
              
         </ul> <em>Applet</em>
         <ul>
@@ -86,6 +91,7 @@
             <li><!-- JAL-2075  -->Hidden columns ignored during feature based tree calculation</li>
             <li><!-- JAL-2065  -->Alignment view stops updating when show unconserved enabled for group on alignment</li>
             <li><!--  JAL-2086  -->Cannot insert gaps into sequence when set as reference</li>
+            <li><!-- JAL-2146 -->Alignment column in status incorrectly shown as &quot;Sequence position&quot; when mousing over annotation</li>
             
           </ul>
           <em>Application</em>
@@ -99,6 +105,7 @@
             <li><!--  JAL-1011  -->Columns are suddenly selected in other alignments and views when revealing hidden columns</li>
             <li><!--  JAL-1989  -->Hide columns not mirrored in complement view in a cDNA/Protein splitframe</li>
             <li><!--  JAL-1369 -->Cannot save/restore representative sequence from project when only one sequence is represented</li>
+            
             <!--  may exclude, this is an external service stability issue  JAL-1941 /> RNA 3D structure not added via DSSR service</li> -->
           </ul>
           <em>Applet</em>