From: Jim Procter <jprocter@issues.jalview.org>
Date: Sun, 4 Jun 2017 11:04:31 +0000 (+0100)
Subject: JAL-2291 bug fix - BitSet.set is [start,end+1)
X-Git-Tag: Release_2_10_2~3^2~35
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=062ece52545770057a16be3274b8d9c62f13d106;p=jalview.git

JAL-2291 bug fix - BitSet.set is [start,end+1)
---

diff --git a/src/jalview/datamodel/Sequence.java b/src/jalview/datamodel/Sequence.java
index a8cff26..8176221 100755
--- a/src/jalview/datamodel/Sequence.java
+++ b/src/jalview/datamodel/Sequence.java
@@ -839,7 +839,7 @@ public class Sequence extends ASequence implements SequenceI
       {
         if (lastj != -1)
         {
-          map.set(lastj, j - 1);
+          map.set(lastj, j);
           lastj = -1;
         }
       }
@@ -847,7 +847,7 @@ public class Sequence extends ASequence implements SequenceI
     }
     if (lastj != -1)
     {
-      map.set(lastj, j - 1);
+      map.set(lastj, j);
       lastj = -1;
     }
     return map;