From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Thu, 3 Nov 2011 17:32:44 +0000 (+0000)
Subject: (JAL-812) javadoc and api method to relayout annotation panel after annotation is... 
X-Git-Tag: Jalview_2_9~564^2~10
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=06a78ad135ffd7a9d4bec8164153bedaff0f0ff3;p=jalview.git

(JAL-812) javadoc and api method to relayout annotation panel after annotation is modified by a third party
---

diff --git a/src/jalview/api/AlignmentViewPanel.java b/src/jalview/api/AlignmentViewPanel.java
index d971acb..70bb3d6 100644
--- a/src/jalview/api/AlignmentViewPanel.java
+++ b/src/jalview/api/AlignmentViewPanel.java
@@ -31,5 +31,15 @@ public interface AlignmentViewPanel extends OOMHandlerI
 
   AlignmentI getAlignment();
   StructureSelectionManager getStructureSelectionManager();
-  void paintAlignment(boolean b);
+  /**
+   * repaint the alignment view after a datamodel update.
+   * @param updateOverview - if true, the overview panel will also be updated and repainted 
+   */
+  
+  void paintAlignment(boolean updateOverview);
+  /**
+   * automatically adjust annotation panel height for new annotation
+   * whilst ensuring the alignment is still visible.
+   */
+  void adjustAnnotationHeight();
 }