From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 15 Jun 2005 15:06:22 +0000 (+0000)
Subject: use .jalview.uniprot.xml
X-Git-Tag: Release_2_0~20
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=06aa9445b88921bd7930421058fcb7fe49365651;p=jalview.git

use .jalview.uniprot.xml
---

diff --git a/src/jalview/io/SequenceFeatureFetcher.java b/src/jalview/io/SequenceFeatureFetcher.java
index bb404d8..cdd628b 100755
--- a/src/jalview/io/SequenceFeatureFetcher.java
+++ b/src/jalview/io/SequenceFeatureFetcher.java
@@ -46,16 +46,11 @@ public class SequenceFeatureFetcher implements Runnable {
     }
 
     public void run() {
-        String cache = jalview.bin.Cache.getProperty("UNIPROT_CACHE");
 
         RandomAccessFile out = null;
 
         try {
-            if (cache == null) {
-                jalview.bin.Cache.setProperty("UNIPROT_CACHE",
-                    System.getProperty("user.home") + "/.jalview.uniprot.xml");
-                cache = jalview.bin.Cache.getProperty("UNIPROT_CACHE");
-            }
+            String cache = System.getProperty("user.home") + "/.jalview.uniprot.xml";
 
             File test = new File(cache);
 
@@ -117,7 +112,6 @@ public class SequenceFeatureFetcher implements Runnable {
             ex.printStackTrace();
         }
 
-        jalview.gui.PaintRefresher.Refresh(null, align);
         findMissingIds(align);
 
         if (sbuffer.length() > 0) {
@@ -133,6 +127,8 @@ public class SequenceFeatureFetcher implements Runnable {
             //ignore for now!!!!!!!!!!
             //  WSWUBlastClient blastClient = new WSWUBlastClient(align, unknownSequences);
         }
+
+        jalview.gui.PaintRefresher.Refresh(null, align);
     }
 
     void ReadUniprotFile(String[] result, RandomAccessFile out, AlignmentI align) {