From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 5 May 2005 10:35:00 +0000 (+0000)
Subject: send rotCanvas sequence and viewport
X-Git-Tag: Release_2_0~320
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=06fef82a8d6fcdcfadc58d747f9f774297cd639d;p=jalview.git

send rotCanvas sequence and viewport
---

diff --git a/src/jalview/gui/PopupMenu.java b/src/jalview/gui/PopupMenu.java
index 3177bfc..aed4a33 100755
--- a/src/jalview/gui/PopupMenu.java
+++ b/src/jalview/gui/PopupMenu.java
@@ -589,14 +589,10 @@ public class PopupMenu extends JPopupMenu
       EBIFetchClient ebi = new EBIFetchClient();
       String[] result = ebi.fetchData("pdb:" + sequence.getPDBId(), null, null);
 
+      System.out.println("Got "+ sequence.getPDBId() );
       PDBfile pdb = new PDBfile(result);
-      sequence.setPDBfile(pdb);
 
-      ( (PDBChain) pdb.chains.elementAt(sequence.maxchain)).isVisible = true;
-      ( (PDBChain) pdb.chains.elementAt(sequence.maxchain)).sequence = sequence;
-    //  ( (PDBChain)pdb.chains.elementAt(sequence.maxchain)).colourBySequence();
-
-      rotCanvas rc = new rotCanvas(pdb);
+      rotCanvas rc = new rotCanvas(pdb, sequence, ap.av);
       JInternalFrame frame = new JInternalFrame();
       frame.setContentPane(rc);
       Desktop.addInternalFrame(frame,sequence.getName()+" "+ sequence.getPDBId(), 400, 400);