From: amwaterhouse <Andrew Waterhouse>
Date: Tue, 27 Feb 2007 13:28:47 +0000 (+0000)
Subject: keep record of atomIndeX
X-Git-Tag: Release_2_3~341
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=075b02dfc45ce07f928ebe4751fdc5f85970bf6e;hp=ea1bc94cb0d4ea4b877101cb7d93283ed4a199fe;p=jalview.git

keep record of atomIndeX
---

diff --git a/src/MCview/Atom.java b/src/MCview/Atom.java
index c15455e..f8fb9b4 100755
--- a/src/MCview/Atom.java
+++ b/src/MCview/Atom.java
@@ -34,12 +34,15 @@ public class Atom
   public int type;
   Color color = Color.lightGray;
   public String chain;
-  int alignmentMapping = -1;
+  public int alignmentMapping = -1;
+  public int atomIndex;
 
   public boolean isSelected = false;
 
   public Atom(String str)
   {
+    atomIndex = Integer.parseInt(str.substring(6, 11).trim());
+
     name = str.substring(12, 15).trim();
 
     resName = str.substring(17, 20);