From: Jim Procter <jprocter@dundee.ac.uk>
Date: Mon, 9 Mar 2015 12:51:46 +0000 (+0000)
Subject: JAL-1565 loading a concise file causes insertions to be automatically hidden in desktop
X-Git-Tag: Jalview_2_9~75^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=0846d23b8e3bd33b2120a0f724299bf05c175f32;p=jalview.git

JAL-1565 loading a concise file causes insertions to be automatically hidden in desktop
---

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 2133f50..7e451aa 100644
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -5213,6 +5213,11 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
                     file, protocol);
             new JnetAnnotationMaker().add_annotation(predictions,
                     viewport.getAlignment(), 0, false);
+            SequenceI repseq = viewport.getAlignment().getSequenceAt(0);
+            viewport.getAlignment().setSeqrep(repseq);
+            ColumnSelection cs = new ColumnSelection();
+            cs.hideInsertionsFor(repseq);
+            viewport.setColumnSelection(cs);
             isAnnotation = true;
           }
           else