From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 16 Jun 2005 13:32:02 +0000 (+0000)
Subject: dont add sequence twice to new group
X-Git-Tag: Release_2_0~15
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=085727a32930d9a05becd66686ed001f50331bc6;p=jalview.git

dont add sequence twice to new group
---

diff --git a/src/jalview/appletgui/TreeCanvas.java b/src/jalview/appletgui/TreeCanvas.java
index 136be52..15c4bfa 100755
--- a/src/jalview/appletgui/TreeCanvas.java
+++ b/src/jalview/appletgui/TreeCanvas.java
@@ -476,7 +476,9 @@ System.out.println("called here");
           Vector sequences = new Vector();
           for (int j = 0; j < l.size(); j++)
           {
-            sequences.addElement( (Sequence) ( (SequenceNode) l.elementAt(j)).element());
+            SequenceI s1 = (SequenceI) ( (SequenceNode) l.elementAt(j)).element();
+            if(!sequences.contains(s1))
+              sequences.addElement(s1);
           }
 
           ColourSchemeI cs = ColourSchemeProperty.getColour(sequences, av.alignment.getWidth(),
diff --git a/src/jalview/gui/TreeCanvas.java b/src/jalview/gui/TreeCanvas.java
index a293e28..1fddc5b 100755
--- a/src/jalview/gui/TreeCanvas.java
+++ b/src/jalview/gui/TreeCanvas.java
@@ -564,9 +564,12 @@ public class TreeCanvas
                                      new Vector());
 
          Vector sequences = new Vector();
-          for (int j = 0; j < l.size(); j++)
-          {
-            sequences.add( (Sequence)((SequenceNode) l.elementAt(j)).element());
+         for (int j = 0; j < l.size(); j++)
+         {
+           SequenceI s1 = (SequenceI) ( (SequenceNode) l.elementAt(j)).element();
+           if (!sequences.contains(s1))
+             sequences.addElement(s1);
+
           }
 
           ColourSchemeI cs = ColourSchemeProperty.getColour(sequences, av.alignment.getWidth(),