From: Jim Procter <jprocter@issues.jalview.org>
Date: Tue, 15 Jan 2019 13:12:10 +0000 (+0000)
Subject: JAL-1767 test that changing view association for PCA panel can be restored
X-Git-Tag: Release_2_11_1_0~78^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=091704be1e1e54b7990e8e6a10f7c0fd12d33416;p=jalview.git

JAL-1767 test that changing view association for PCA panel can be restored
---

diff --git a/test/jalview/project/Jalview2xmlTests.java b/test/jalview/project/Jalview2xmlTests.java
index fb2d3e9..3f4ed71 100644
--- a/test/jalview/project/Jalview2xmlTests.java
+++ b/test/jalview/project/Jalview2xmlTests.java
@@ -1120,15 +1120,18 @@ public class Jalview2xmlTests extends Jalview2xmlBase
       AlignFrame af = new FileLoader().LoadFileWaitTillLoaded(exampleFile,
               DataSourceType.FILE);
       assertNotNull(af, "Didn't read in the example file correctly.");
+      AlignmentPanel origView = (AlignmentPanel) af.getAlignPanels().get(0);
       AlignmentPanel newview = af.newView(PCAVIEWNAME, true);
       // create another for good measure
       af.newView("Not the PCA View", true);
-      PCAPanel pcaPanel = new PCAPanel(newview, "BLOSUM62",
+      PCAPanel pcaPanel = new PCAPanel(origView, "BLOSUM62",
               new SimilarityParams(true, true, true, false));
-
       // we're in the test exec thread, so we can just run synchronously here
       pcaPanel.run();
 
+      // now switch the linked view
+      pcaPanel.selectAssociatedView(newview);
+
       assertTrue(pcaPanel.getAlignViewport() == newview.getAlignViewport(),
               "PCA should be associated with 'With PCA' view: test is broken");