From: Jim Procter <j.procter@dundee.ac.uk>
Date: Mon, 6 Oct 2014 11:39:13 +0000 (+0100)
Subject: JAL-654 remove any annotation rows for chain specific query
X-Git-Tag: Jalview_2_9~174^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=095d07c7765f6925736c41896b9bdff8df369f4e;p=jalview.git

JAL-654 remove any annotation rows for chain specific query
---

diff --git a/src/jalview/ws/dbsources/Pdb.java b/src/jalview/ws/dbsources/Pdb.java
index a352de6..f222aaa 100644
--- a/src/jalview/ws/dbsources/Pdb.java
+++ b/src/jalview/ws/dbsources/Pdb.java
@@ -21,6 +21,7 @@
 package jalview.ws.dbsources;
 
 import jalview.datamodel.Alignment;
+import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.DBRefEntry;
 import jalview.datamodel.DBRefSource;
 import jalview.datamodel.PDBEntry;
@@ -193,6 +194,13 @@ public class Pdb extends EbiFileRetrievedProxy implements DbSourceProxy
         for (SequenceI pdbcs : toremove)
         {
           pdbfile.deleteSequence(pdbcs);
+          if (pdbcs.getAnnotation()!=null)
+          {
+            for (AlignmentAnnotation aa: pdbcs.getAnnotation())
+            {
+              pdbfile.deleteAnnotation(aa);
+            }
+          }
         }
       }