From: Jim Procter <jprocter@issues.jalview.org>
Date: Thu, 3 Sep 2015 21:19:34 +0000 (+0100)
Subject: JAL-1863 allow RNA secondary structure rows exported by Jalview to be imported again
X-Git-Tag: Release_2_10_0~492^2~4
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=09e3cf7d0e936a9b69fc8f6c7315195694c5127e;p=jalview.git

JAL-1863 allow RNA secondary structure rows exported by Jalview to be imported again
---

diff --git a/src/jalview/io/AnnotationFile.java b/src/jalview/io/AnnotationFile.java
index 6cce211..dcca491 100755
--- a/src/jalview/io/AnnotationFile.java
+++ b/src/jalview/io/AnnotationFile.java
@@ -1301,8 +1301,8 @@ public class AnnotationFile
         }
       }
       if (hasSymbols
-              && (token.equals("H") || token.equals("E")
-                      || token.equals("S") || token.equals(" ")))
+              && (token.length() == 1 && "()<>[]{}AaBbCcDdEeFfGgHhIiJjKkLlMmNnOoPpQqRrSsTtUuVvWwXxYyZz"
+                      .contains(token)))
       {
         // Either this character represents a helix or sheet
         // or an integer which can be displayed