From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 26 Oct 2006 12:17:13 +0000 (+0000)
Subject: Sequence length maybe less than end
X-Git-Tag: Release_2_2~218
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=0c40653e5033e68c8d87955ea9f96879c8114b62;hp=e905bf509cf285c9b73ee6d89be1a038c4e41e2c;p=jalview.git

Sequence length maybe less than end
---

diff --git a/src/jalview/commands/ChangeCaseCommand.java b/src/jalview/commands/ChangeCaseCommand.java
index ad5c937..49faa50 100644
--- a/src/jalview/commands/ChangeCaseCommand.java
+++ b/src/jalview/commands/ChangeCaseCommand.java
@@ -69,14 +69,15 @@ public class ChangeCaseCommand implements CommandI
     for (int r = 0; r < regions.length; r++)
     {
       start = regions[r][0];
-      end = regions[r][1];
       for (int s = 0; s < seqs.length; s++)
       {
         sequence = seqs[s].getSequence();
         StringBuffer newSeq = new StringBuffer();
 
-        if (end > sequence.length())
+        if (regions[r][1] > sequence.length())
           end = sequence.length();
+        else
+          end = regions[r][1];
 
         if (start > 0)
         {