From: James Procter Date: Mon, 17 Jul 2023 09:28:13 +0000 (+0100) Subject: Merge branch 'develop' into feature/JAL-4227_Rfam2020_sslines X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=0c90355de2854b4ba6f30c1c162f9cb0c712351a;hp=5771e6a607dac958b1174178b807bf6c5e17a47f;p=jalview.git Merge branch 'develop' into feature/JAL-4227_Rfam2020_sslines --- diff --git a/examples/RF00162.stk b/examples/RF00162.stk new file mode 100644 index 0000000..8298519 --- /dev/null +++ b/examples/RF00162.stk @@ -0,0 +1,1091 @@ +# STOCKHOLM 1.0 +#=GF ID SAM +#=GF AC RF00162 +#=GF DE SAM riboswitch (S box leader) +#=GF AU Ontiveros-Palacios N; 0000-0001-8457-4455 +#=GF GA 44.4 +#=GF NC 44.3 +#=GF TC 44.4 +#=GF PI S_box +#=GF SE Grundy F, Henkin T, PMID:10094622 +#=GF SS Published; PMID:10094622 +#=GF TP Cis-reg; riboswitch; +#=GF BM cmbuild -F CM SEED +#=GF CB cmcalibrate --mpi CM +#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 742849.287494 CM SEQDB +#=GF CL CL00012 +#=GF DR SO; 0000035; riboswitch; +#=GF DR GO; 0010468; regulation of gene expression; +#=GF RN [1] +#=GF RM 10094622 +#=GF RT The S box regulon: a new global transcription termination control system +#=GF RT for methionine and cysteine biosynthesis genes in gram-positive bacteria. +#=GF RA Grundy FJ, Henkin TM +#=GF RL Mol Microbiol 1998;30:737-749. +#=GF RN [2] +#=GF RM 12910260 +#=GF RT An mRNA structure that controls gene expression by binding +#=GF RT S-adenosylmethionine. +#=GF RA Winkler WC, Nahvi A, Sudarsan N, Barrick JE, Breaker RR +#=GF RL Nat Struct Biol 2003;10:701-707. +#=GF RN [3] +#=GF RM 12702767 +#=GF RT The riboswitch-mediated control of sulfur metabolism in bacteria. +#=GF RA Epshtein V, Mironov AS, Nudler E +#=GF RL Proc Natl Acad Sci U S A 2003;100:5052-5056. +#=GF RN [4] +#=GF RM 15215334 +#=GF RT Comparative genomics of the methionine metabolism in Gram-positive +#=GF RT bacteria: a variety of regulatory systems. +#=GF RA Rodionov DA, Vitreschak AG, Mironov AA, Gelfand MS +#=GF RL Nucleic Acids Res 2004;32:3340-3353. +#=GF RN [5] +#=GF RM 16810258 +#=GF RT Structure of the S-adenosylmethionine riboswitch regulatory mRNA element. +#=GF RA Montange RK, Batey RT +#=GF RL Nature. 2006;441:1172-1175. +#=GF RN [6] +#=GF RM 20006621 +#=GF RT Discrimination between closely related cellular metabolites by the SAM-I +#=GF RT riboswitch. +#=GF RA Montange RK, Mondragon E, van Tyne D, Garst AD, Ceres P, Batey RT +#=GF RL J Mol Biol. 2010;396:761-772. +#=GF RN [7] +#=GF RM 20637415 +#=GF RT Free state conformational sampling of the SAM-I riboswitch aptamer domain. +#=GF RA Stoddard CD, Montange RK, Hennelly SP, Rambo RP, Sanbonmatsu KY, Batey RT +#=GF RL Structure. 2010;18:787-797. +#=GF RN [8] +#=GF RM 20951706 +#=GF RT SAM recognition and conformational switching mechanism in the Bacillus +#=GF RT subtilis yitJ S box/SAM-I riboswitch. +#=GF RA Lu C, Ding F, Chowdhury A, Pradhan V, Tomsic J, Holmes WM, Henkin TM, Ke A +#=GF RL J Mol Biol. 2010;404:803-818. +#=GF RN [9] +#=GF RM 22355167 +#=GF RT YbxF and YlxQ are bacterial homologs of L7Ae and bind K-turns but not +#=GF RT K-loops. +#=GF RA Baird NJ, Zhang J, Hamma T, Ferre-D'Amare AR +#=GF RL RNA. 2012;18:759-770. +#=GF RN [10] +#=GF RM 22539525 +#=GF RT Structure and folding of a rare, natural kink turn in RNA with an A*A pair +#=GF RT at the 2b*2n position. +#=GF RA Schroeder KT, Daldrop P, McPhee SA, Lilley DM +#=GF RL RNA. 2012;18:1257-1266. +#=GF RN [11] +#=GF RM 23325110 +#=GF RT The plasticity of a structural motif in RNA: structural polymorphism of a +#=GF RT kink turn as a function of its environment. +#=GF RA Daldrop P, Lilley DM +#=GF RL RNA. 2013;19:357-364. +#=GF RN [12] +#=GF RM 27016741 +#=GF RT A critical base pair in k-turns determines the conformational class +#=GF RT adopted, and correlates with biological function. +#=GF RA Huang L, Wang J, Lilley DM +#=GF RL Nucleic Acids Res. 2016;44:5390-5398. +#=GF RN [13] +#=GF RM 33978763 +#=GF RT Structure and folding of four putative kink turns identified in structured +#=GF RT RNA species in a test of structural prediction rules. +#=GF RA Huang L, Liao X, Li M, Wang J, Peng X, Wilson TJ, Lilley DMJ +#=GF RL Nucleic Acids Res 2021;49:5916-5924. +#=GF CC The SAM riboswitch is found upstream of a number of genes which code for +#=GF CC proteins involved in methionine or cysteine biosynthesis in Gram-positive +#=GF CC bacteria. The SAM riboswitch acts at the level of transcription +#=GF CC termination control. The predicted structure consists of a complex +#=GF CC stem-loop region followed by a single stem loop terminator region. An +#=GF CC alternative and mutually exclusive form involves bases in the 3' segment +#=GF CC of helix 1 with those in the 5' region of helix 5 to form a structure +#=GF CC termed the anti-terminator form [1]. This entry represents the conserved +#=GF CC core of the complex structure involving helices 1-4. The structure of SAM +#=GF CC riboswitch has been reported in PDBs: 2GIS, 2YDH, 2YGH, 3GX2, 3GX3, 3GX5, +#=GF CC 3GX6, 3GX7, 3IQN, 3IQP, 3IQR, 3V7E_C, 3V7E_D, 4AOB, 4B5R, 4KQY, 5FJC, +#=GF CC 5FK1, 5FK2, 5FK3, 5FK4, 5FK5, 5FK6, 5FKD, 5FKE, 5FKF, 5FKG, 5FKH, 7EAF +#=GF CC [5-13] +#=GF WK SAM_riboswitch_(S_box_leader) +#=GF SQ 457 + +AF027868.1/5245-5154 U-UUCUAUCCAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-ACC-UCGGCAACA-------UU-----------------------------------------------------------AU------------UGUGCCA-AUUC--CAG-CAAGC-------GCUA------- +AF269983.1/571-671 A-CCUUAUUUUGAG-AAG-C-UG-----------------AGGGA-UUUGG-CCCAU--AGAA-GCU-UCAGCAACC-G-ACU-UUA---------------------------------------------------------AAU----AGC-AC--GGUGCUA-AUAC--CAA-CGAG--------CAA-------- +AJ000974.1/281-386 A-ACUUAUCAAGAG-CGG-C-UG-----------------AGGGA--CUGG-ACCUA--UGAA-GCC--CGGCAACC-U-GCA-UAG---------------------------------------------------------UUU----GUA-A---GGUGCUA-CUUC--CAG-CAAAAUG-----AAUUC------ +AL596164.1/95936-95817 C-UCUUAUCGAGAG-CGG-C-AG-----------------AGGGA--CUGG-CCCGA--UGAA-GCC--CGGCAACC-U-AAC-UUUAUUUAA-----------------------------------------------GCGUAAA----GUG-AA--GGUGCUA-AUUC--CAG-CAAAAUGG---UGUAUU------ +AL591974.1/109385-109266 C-UCUUAUCGAGAG-CGG-C-AG-----------------AGGGA--CUGG-CCCGA--UGAA-GCC--CGGCAACC-U-AAC-UUUAUUUAA-----------------------------------------------GCAUAAA----GUG-AA--GGUGCUA-AUUC--CAG-CAAAAUGG---UGUAUU------ +U52812.1/691-829 C-UCUUAUCCCGAGCUGG-C-GG-----------------AGGGA--CAGG-CCCUA--UGAA-GCC--CAGCAACC-G-GUU-UCUCUGUUAUUUAUUAUG----------------------------UUCAAUUGAGUGAGACA----ACC-AA--GGUGCUA-ACCU-GUUG-CAAGGUU-----GUAUG------ +AL596169.1/221462-221354 C-UCUUAUCCAGAG-CGG-U-AG-----------------AGGGA--CUGA-CCCUU--UGAA-GCC--CAGCAACC-U-ACA-CAUAU-------------------------------------------------------AAG----UGA-AA--GGUGCUA-AUCU-GUUG-CAGGAGU----AAUAU------- +AL591980.1/66651-66543 C-UCUUAUCCAGAG-CGG-U-AG-----------------AGGGA--CUGA-CCCUU--UGAA-GCC--CAGCAACC-U-ACA-CAUAU-------------------------------------------------------AAG----UGA-AA--GGUGCUA-AUCU-GUUG-CAGGAGU----AUUAU------- +AL596172.1/176254-176136 A-UCUUAUCCAGAG-UGG-U-GG-----------------AGGGA--AAUG-CCCUG--UGAA-ACC--CAGCAACC-U-AAA-CAAUAAUUC----------------------------------------------AUUAUGUG----UUU-AA--GGUGCUA-AGUC--AUG-CAGAACAA---CGAUU------- +AL591983.1/96176-96058 A-UCUUAUCCAGAG-UGG-U-GG-----------------AGGGA--AAUG-CCCUA--UGAA-GCC--CAGCAACC-U-AAA-CAAUAAUUC----------------------------------------------AUUAUGUG----UUU-AA--GGUGCUA-AGUC--AUG-CAGAACAA---CUAAU------- +AL596170.1/192-86 C-UCUUAUUAUGAG-UGG-U-AG-----------------AGGGA--CUGG-CCCGU--UGAA-ACC--CAGCAACC-U-UUC-AAUUC------------------------------------------------------GUUG----AAA-A---GGUGCUA-AAUC--CUG-CGAAGUG-----UGAU------- +AL591980.1/89597-89491 C-UCUUAUAAUGAG-UGG-U-AG-----------------AGGGA--CUGG-CCCGU--UGAA-ACC--CGGCAACC-U-UUC-AAUAC------------------------------------------------------GUUG----AAA-A---GGUGCUA-AAUC--CUG-CGAAGUG-----UGAU------- +AL939119.1/177986-178133 C-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA-UACGG-CCCGA--UGAA-GCC-CCGGCAACC-C-UCC-AGUCGGUUCUUGUCACACGGA----------------------CGUGGCGAGGCUCCCGGCUA----GGG-AA--GGUGCCA-AAUC--CGU-CUCACGGC---GAGAUGC----- +AB090330.1/380-279 U-ACUUAUCAAGAG-CGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-GCC--CAGCAACC-U-AUA-UGAAA------------------------------------------------------AUAU----AUA-A---GGUGCUA-AAUC--CUG-CAGCA--------UA-------- +U36379.1/1-106 A-UCCU-----GAG-UGG-U-GG-----------------AGGGA-CAUGGACCCAA--UGAA-ACC--CAGCAACC-U-CUU-UUUUA------------------------------------------------------UAAA----AGA-AA--GGUGCCA-AACCGUUUG-CAGACA------AAUA------- +L42943.1/254-144 C-UCUUAUCCUGAG-UGG-U-GG-----------------AGGGA-CAUGGACCCAA--UGAA-ACC--CAGCAACC-U-CUU-UUUUA------------------------------------------------------UAAA----AGA-AA--GGUGCCA-AACCGUUUG-CAGACA------AAUA------- +AF270301.1/145-36 C-UCUUAUCCUGAG-UGG-U-GG-----------------AGGGA-CAUGGACCCAA--UGAA-ACC--CAGCAACC-U-CUU-UAUU--------------------------------------------------------UAA----AGA-AA--GGUGCCA-AACCGUUUG-CAGACAA-----AUAU------- +AJ002571.1/38016-37861 C-UCUUAUCGAGAGUUGG-G-CG-----------------AGGGA--UUGG-CCUUU--UGAC-CCCAACAGCAACC-G-ACC-GUAAUACCAUUGUGAAAUGGGGCGCACUGC-----UUUUCGCGCCGAGACUGAUGUCUCAUAA----GGC-AC--GGUGCUA-AUUC--CAU-CAGAU--------UGU------- +AL596163.1/172398-172500 U-UCUUAUCCAGAG-UGG-U-GG-----------------AGGGA-AUCGG-CCCAG--UGAA-ACC--CGGCAGCG-G-AGC-GC----------------------------------------------------------AAG----UUC-----UAUGCUA-AUUC-CGAU-CAGAAG------UAAU------- +AL591973.1/137133-137235 U-UCUUAUCAAGAG-UGG-U-GG-----------------AGGGA-AUCGG-CCCAG--UGAA-ACC--CAGCAGCG-G-AGC-GC----------------------------------------------------------AAG----UUC-----UAUGCUA-AUUC-CGAU-CAGAAG------UAAU------- +AL596165.1/180914-180814 U-UCUUAUCACGAA-AGG-U-GG-----------------AGGGA--CUGG-CCCUU--UGAA-GCC-UUAGCAACC-G-GAA-UUU---------------------------------------------------------AUU----UUC-AC--GGUGCUA-AUUC--CAG-CAGUA--------UA-------- +AL596166.1/166748-166844 A-ACUUAUCAAGAA-AGG-U-GG-----------------AGGGU-UCUGG-CCCAG--UGAA-GCC-UUGGCAACC-G-GAC-UU-----------------------------------------------------------------UUC-AC--GGUGCCA-AAUC--CAG-CAGU---------AUC------- +AL591976.1/242770-242867 A-ACUUAUCAAGAA-AGG-U-GG-----------------AGGGU-UCUGG-CCCCG--UGAA-GCC-UUGGCAACC-G-GAU-UU-----------------------------------------------------------------UUC-AC--GGUGCCA-AAUC--CAG-CAGG--------UAAC------- +AE017333.1/969726-969839 U-UCUUAUUCAGAG-AGG-C-GG-----------------AGGGA-AUUGG-CCCUG--UGAA-ACC-UCGGCAGCG-G-GUU-CUGCAUA--------------------------------------------------CAGCAG----AAU-AC--UGUGCCA-CAUC--CAA-CAAGCCG-----UACG------- +BX571856.1/15939-16037 U-UCUUAUUGUGAG-AAG-U-UG-----------------AGGGA-CUUGG-CCCUG--UGAU-ACU-UCAGCAACC-G-ACU-UU----------------------------------------------------------AUA----G-C-AC--GGUGCUA-AAAC--CAA-CGAGUU----------------- +AE017225.1/3092372-3092274 U-UCUUAUCCAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC--CAGCAACC-G-CGA--------------------------------------------------------------------UGC-A---GGUGCUA-AUUC--CAG-CAGAACA-----AAUU------- +AP006716.1/475254-475360 C-UCUUAUCAAGAG-UGG-U-GG-----------------AGGGA--UGUG-CCCUA--AGAA-GCC--CAGCAACC-G-UCG-UUU---------------------------------------------------------AAC----GAA-AU--GGUGCUA-AUUC--ACA-UAAAGUAG---ACAAU------- +AP006716.1/507636-507743 G-ACUUAUCCAGAG-AAG-U-GA-----------------AGGGA-UUUGG-CCCAA--UGAA-ACU-UCAGCAACA-G-ACU-UAAAAG----------------------------------------------------ACAAA----AGU-AC--UGUGCUA-ACUC-CAAA-GAGGU----------A------- +BA000028.3/2365513-2365403 C-UCUUAUUCAGAGUUGG-U-GG-----------------AGGGA--CAGA-CCCGA--UGAA-GCC--CAGCAACC-A-UCA-CUACU-------------------------------------------------------GGU----GAA-AA--GGUGCUA-AUCU-GAUG-CAAGGAUA---AUAGU------- +AE017225.1/177275-177161 C-UCUUAUCAAGAG-UGG-C-GG-----------------AGGGA--CUGG-CCCGA--UGAU-GCC--CGGCAACCGA-GCU-UAUGACG---------------------------------------------------UAUAA----GCU-AA--GGUGCUA-AUUC--CUG-CAAAAUG-----AGUUU------ +AP008934.1/131883-131770 C-UCUUAUUAAGAGUGAG-U-GG-----------------AGGGA-CUUGG-CCCUA--UGAA-ACU-CCAGCAACA-G-CAG-UC----------------------------------------------------------AUA----UGC-GA--UGUGCUA-AAUC--CAA-CAACUCA-----GUAUGAC---- +AE017225.1/1375419-1375524 U-UCUUAUAAAGAG-AGG-C-GG-----------------AGGGA--CUGG-CCCUA--CGAU-GCC-UCGGCAGCGGA-CUC-GAUUU-------------------------------------------------------UAG----AGU-GC--UGUGCCA-AAUC--CAG-CAAGCAU-----GUG-------- +CP000046.1/900604-900707 C-UCUUAUCGAGAG-UGG-U-GG-----------------AGGGA--UGUG-CCCUA--CGAA-GCC--CGGCAACC-G-UCU-UAU---------------------------------------------------------AUA----GAA-AU--GGUGCCA-AUUC--ACA-UAAAGUU-----UUAA------- +BA000043.1/974636-974744 U-UCUUAUCAAGAGCAGG-C-GG-----------------AGGGA--CGAG-CCCAA--UGAA-GCC--CGGCAACC-G-GCU-UGGCGCG---------------------------------------------------CGCCA----AGC-AC--GGUGCUA-AUUC--UUG-CAGCG--------GAA------- +CP000001.1/185418-185523 U-ACUUAUCCAGAG-AGG-U-AG-----------------AGGGA--CUGG-CCCUA--UGAC-ACC-UCAGCAGCG-G-GUU-CUGUAA-----------------------------------------------------UAGG----AAC-AC--CGUGCUA-AUUC--CAG-CAAG---------CAA------- +CP000001.1/3927237-3927096 C-UCUUAUCAAGAGCAGG-U-GG-----------------AGGGA-UUUGG-CCCGA--UGAA-GCC--CAGCAACC-G-ACC-GUAAUACCAUUGUGAAAUGG------------------------GGCGUUUAUGACGCCAAAA----GGC-AC--GGUGCUA-AUUC--CAG-CAGAAAG-----UAAAA------ +CP000046.1/2381002-2380907 C-ACUUAUCUAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-GCC-UCGGCAACA--------UCUC-------------------------------------------------------GAA------------UGUGCCA-AUUC--CAG-UAACC-------GUAA------- +BA000028.3/3162073-3162182 C-UCUUAUCAAGAG-UGG-U-GG-----------------AGGGA-AUAGG-CCCUG--CGAA-GCC--CGGCAACC-U-GUA-GCAAUU----------------------------------------------------GCUAU----UGA-AA--GGUGCUA-AAUC--CUA-CAGACU------UCAU------- +AE017355.1/3872413-3872520 U-UCUUAUCAAGAGCAGG-U-GG-----------------AGGGA--CGAG-CCCGA--CGAA-ACC--CGGCAACC-G-AUC-UACAUAA---------------------------------------------------UUGUA----GAC-AC--GGUGCUA-AUUC--UCG-CAGC---------AUU------- +AP006840.1/2688754-2688649 G-GUUCAUCGAGAG-UGG-C-GG-----------------AGGGA--CUGG-CCCCA--UGAU-GCC-ACGGCAACC-U-CUC-CCGCG-------------------------------------------------------GGG----AGA-AC--GGUGCCA-AAUC--CAG-CGGAC-------ACUC------- +AE017333.1/1735574-1735680 A-ACUUAUCAAGAG-CGG-U-GG-----------------AGGGA--CUGG-UCCGA--UGAA-ACC--CGGCAACC-U-GCG-UGUGA-------------------------------------------------------AGC----GUA-A---GGUGCUA-CUUC--CAG-CAAAAUG-----CCCU------- +AE017355.1/4749676-4749569 C-UCUUAUCAAGAG-AGG-U-GG-----------------AGGGA-CUGUG-CCCUG--UGAA-GCC--CGGCAACC-G-UCA-ACUUA------------------------------------------------------UGUU----GAA-AU--GGUGCCA-AUUC--CUG-CAAAGC------AAAU------- +CP000029.1/480767-480869 C-UCUUAUCGAGAG-AGG-U-GG-----------------AGGGA--UGUG-CCCUA--AGAA-GCC--CGGCAACC-G-UCU-AAA---------------------------------------------------------AUA----GAA-AU--GGUGCCA-AUUC--ACA-UAAAGUA-----UAAC------- +BA000043.1/883132-883242 U-UCUUAUCAAGAG-AAG-C-GG-----------------AGGGA-ACUGG-CCCAA--UGAA-GCU-UCAGCAACC-A-GCC-GCCCG-------------------------------------------------------GCG----GCC-A---GGUGCUA-AAUC--CAG-CGAAUUGA--GCAUUC------- +AP006627.1/604071-603968 U-UCUUAUUAAGAG-GAG-C-AG-----------------AGGGA--CUGG-CCCAA--UGAU-GCU-UCAGCAACC-C-CGC-CAU---------------------------------------------------------GAG----CGG-AA--GGUGCUA-AUUC--CAG-CAGGA-------CUAC------- +AE017355.1/1833727-1833836 U-UCUUAUUAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUU--CGAA-GCC-UCAGCAACC-UGAUU-UAUGU-------------------------------------------------------GAU----AUA-AA--GGUGCUA-AAUC--CUG-UAGGAUA-----UAAA------- +AP006627.1/3104693-3104588 U-UCUUAUCGAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCAA--UGAA-ACC--CGGCAACC-G-CAA-GUU---------------------------------------------------------CGC----UUG-AA--GGUGCUA-AAUC--CUG-CAAAGCA-----UAUG------- +AE017334.2/197187-197081 A-UUGUAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUU--UGAA-ACC-UCGGCAGCA-G-GUU-CAUUU-------------------------------------------------------UUG----AAU-AC--UGUGCCA-CUUC--CUG-CAAGCU------UUAU------- +BA000043.1/972359-972191 C-UCUUAUCAAGAGUUGG-C-UG-----------------AGGGA-AUUGG-CCCAA--UGAA-GCC--CAGCAACC-G-ACC-GUAAUACUAUCGUGAGAUAGGGCGCACGCCAAGGGCGGCGCCGGAAGCGUCAUGCUUCCGCAG----GGC-AC--GGUGCUA-AGUC--CAA-CAGAAAGACCGAUGUC------- +BA000043.1/2876470-2876356 C-UCUUAUCCCGAGCCGG-U-GG-----------------AGGGA--CAGG-CCCGA--UGAA-GCC--CAGCAACC-G-UCA-CAACUGUA------------------------------------------------CAUGUGU----GAA-AU--GGUGCUA-ACCU-GUGG-CAAGGCG-----CAGU------- +BA000028.3/2134366-2134264 A-ACUUAUCCAGAG-UGA-C-GG-----------------AGGGA-ACAGG-ACCUA--CGAU-GUC-ACAGCAACC-U-ACC-UU----------------------------------------------------------UAC----GGA-GU--GGUGCUU-CUUC--CUG-CAGAA--------UUU------- +BA000004.3/3590821-3590709 C-UCUUAUCAUGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-GCC--CAGCAACC-G-CCA-AGCAGCAAA-----------------------------------------------UCGCUUG----GAA-AA--GGUGCUA-AUUC--CUG-CAAAG-------CGAU------- +AE017333.1/1487506-1487363 C-UCUUAUCGAGAGUUGG-G-UG-----------------AAGGA--CUGG-CCUAA--UGAU-CCCAACAGCAACC-G-ACC-GUAAUACCAUUGUGAAAUGGGG--------------------CGCGAAUCUCUGCGCCGCUAG----GGC-AC--GGUGCUA-AUUC--CAU-CAGACUU-----UGAA------- +AE017180.1/2700118-2700220 U-UCUUAUCAAGAG-UGG-U-GG-----------------AGGGA--AAGG-CCCUG--UGAA-ACC-ACAGCAACC-G-GUC-CGGUAG----------------------------------------------------CGGAC----GCC-A---GGUGCUA-AAUC--CUG-CCCGA------------------ +AE017334.2/4074410-4074519 U-UCUUAUCUAGAG-AGG-U-AG-----------------AGGGA--CUGG-CCCUA--UGAC-GCC-UCAGCAACC-A-UUA-ACAUU------------------------------------------------------UGUU----AAU-AA--GGUGCUA-AUUC--CAG-CAAAUUG----CGAAA------- +AE017225.1/4554904-4554783 C-UCUUAUCCCGAGCUGG-C-GG-----------------AGGGA--CAGG-CCCGA--UGAA-GCC--CAGCAACC-U-CAC-UUGUAGUGGU--------------------------------------------AAAUACAGG----UGA-AU-AGGUGCUA-AAACCUGUG-CGAGGCU-----ACAG------- +BA000043.1/3025512-3025403 C-UCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--UGUG-CCCAA--UGAA-GCC--CGGCAACC-G-UCA-GCGCAU----------------------------------------------------GUGCU----GAA-AU--GGUGCCA-AUUC--ACA-CAAAGCG-----GCCU------- +BA000028.3/3200638-3200530 A-UCUUAUCCUGAG-AGG-U-GG-----------------AGGGA-AAUGG-CCCAA--AGAA-GCC-UCGGCAACA-G-GUU-CUAGC-------------------------------------------------------UUG----AAU-AC--UGUGCCA-AAUC--CAU-CAAGUAU-----UCUA------- +AP006627.1/3008449-3008342 C-UUUUAUCCAGAGAUGG-C-GG-----------------AGGGA--CAGG-CCCGA--AGAA-GCC--CAGCAACC-A-ACA-CGUAA-------------------------------------------------------CGU----GUA-AA--GGUGCUA-A--C--CUG-CAGAAUG-----CUCGG------ +AE017333.1/4014357-4014466 U-CCUUAUCAAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCUG--UGAA-ACC--CGGCAACC-G-CUG-UCUAU-------------------------------------------------------GAC----AGA-AU--GGUGCUA-AAUC--CUU-AAGAGCA-----UGUUC------ +AE017225.1/320618-320724 U-UCUUAUCCAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUA--CGAU-ACC-UCAGCAACG-G-GUU-UUUUU-------------------------------------------------------AAU----AC------CGUGCUA-ACUC--CAG-CAAGCCAU---AUAAA------- +AE017333.1/3063716-3063609 A-GCUUAUAAAGAG-AGA-U-GG-----------------AGGGA--CUGG-CCCGG--UGAA-AUC-UCAGCAACC-U-GCA-GC----------------------------------------------------------AGU----GCA-A---GGUGCUA-AAUC--CAG-CAGAAUG-----UCAGGC----- +AE017355.1/1384699-1384807 A-GCUUAUCAAGAG-AAG-C-GG-----------------AGGGA-ACUGG-CCCGG--CGAA-GCU--CGGCAACC-U-GCU-UAUAG-------------------------------------------------------AAA----GCA-A---GGUGCUA-AAUC--CAG-CAAAAUG-----GAAUC------ +AP006840.1/138157-138265 C-UCUUAUCAAGAG-AAG-C-GG-----------------AGGGA-CCUGG-CCCGA--UGAA-GCU-UCGGCAACCAG-CCU-GCGUC------------------------------------------------------ACCA----GGC-AA--GGUGCCA-AGUC--CAG-CCGGGCA-----UACU------- +AE017333.1/1292148-1292264 U-UCUUAUCACGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUU--UGAA-ACC-UCAGCAACC-G-GUC-UGCACUGACGA-------------------------------------------CGUCAGUGC----ACC-AA--GGUGCUA-AAUC--CAG-CAAGCGG-----AUG-------- +AE017355.1/768972-768867 G-UCUUAUCAAGAGCAGG-U-GG-----------------AGGGA--UGAG-CCCUA--CGAA-GCC--CGGCAACC-G-ACC-CAUUU-------------------------------------------------------AUG----GGC-AC--GGUGCUA-AUUC--UUA-CAACA-------CAUU------- +BA000045.2/2730826-2730714 G-ACUUAUCCAGAGCAGG-C-GU-----------------AGGGA-ACAGG-CCCGG--UGAC-GCC-ACGGCAACCGC-CCA-CUAGC-------------------------------------------------------AAC----GGG-AAAAGGUGCCA-AUUC--CUG-CGGUUCC-----UCAC------- +CP000029.1/1935501-1935405 A-ACUUAUCAAGAG-AAG-U-GG-----------------AGGGA--CUGG-CCCAA--AGAA-GCU-UCGGCAACA-------UUGUA-------------------------------------------------------UCA------------UGUGCCA-AUUC--CAG-UAACCGA-----GAA-------- +AP006627.1/1705479-1705377 U-UCUUAUCCAGAG-AGA-U-GG-----------------AGGGA-UUUGG-CCCUU--UGAA-GUC-UCAGCAACC-G-GCC-UUU-----------------------------------------------------------G----GCA-AU--GGUGCUA-AUUC--CAA-UAGGUAA-----UGUA------- +AE017334.2/2953356-2953255 U-UCUUAUCACGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-ACC-UCGGCAGCG-G-AUU-CGUUA-------------------------------------------------------UGA----AUA-C---UGUGCCA-AUUC--CAG-CAAGG----------U------- +AE017355.1/2515876-2515991 U-ACUUAUCCAGAG-AGG-U-GG-----------------AGGGA--ACGG-CCCUA--UGAA-ACC-UCAGCAACC-C-CUA-UGUAAA----------------------------------------------------UGCAU----AGG-AA--GGUGCUA-AUUC--C-G-CAGAGAA-----CACGUUG---- +AP006627.1/1563582-1563686 C-UCUUAUAACGAG-AAG-C-GG-----------------AGGGA--CUGG-CCCAA--UGAA-GCU-UCAGCAACC-A-UUC-AUUGC-------------------------------------------------------GAU----GAA-AA--GGUGCUA-AAUC--CAG-CAAAGGG-----AAC-------- +BA000004.3/910192-910088 U-UCUUAUCCAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCUG--UGAA-GCC--CGGCAACC-U-CUU-UUUU--------------------------------------------------------UAA----AGA-A---GGUGCCA-AUUC--CAG-CAGAACA-----UGAU------- +AE017225.1/4074580-4074471 C-UCUUAUUGAGAG-CGG-U-GG-----------------AGGGA--AAGG-CCCUG--UGAA-ACC--CGGCAACC-U-UCA-AACGAAA---------------------------------------------------UGUUU----GAA-AC--GGUGCUA-AUAC--CUG-CAAAAC------GAAU------- +BA000028.3/1319041-1319141 U-ACUUAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCGC--UGAA-ACC-UCAGCAAC--A-GAA-CGCAU-------------------------------------------------------CUG----UCU------GUGCUA-AAUC--CUG-CAAGC--------AAU------- +BA000028.3/727026-727131 G-ACUUAUCAAGAG-AGA-U-GG-----------------AGGGA--UUGG-CCCGA--UGAA-GUC-UCAGCAACC-A-GCC-UAGAU-------------------------------------------------------AAG----G-U-AU--GGUGCUA-AUUC--CAA-UAGGCUU-----ACAA------- +AE009951.2/1317653-1317567 U-AACCAUCCAGAG-AAA-C-GG-----------------AGGGA--CUGG-CCCAA--UGAU-GUU-UCAGCAACC-U-ACU-UA----------------------------------------------------------AAU----GUG-U---GGUGCUA-AUUC--CAG------------------------ +AP008934.1/276954-277060 C-UCUUAUCAAGAG-UGG-U-GG-----------------AGGGA--UGUG-CCCGA--UGAA-ACC--CAGCAACC-G-UCG-AUUU--------------------------------------------------------UUC----GAA-AU--GGUGCUA-AGUC--ACA-AAAAGUU-----AUUU------- +AP006840.1/278272-278389 C-UCUUAUCCAGAGUAGG-C-UG-----------------AGGGA--CUGG-CCCGA--UGAC-GCC-ACGGCAACC-G-GCA-CGUCUCCC------------------------------------------------CAGGCGU----GCA-GC--GGUGCCA-AUUC--CUG-GGGAGGG-----CUCCG------ +AE017333.1/3302616-3302509 C-UCUUAUCCAGAG-AGG-U-GG-----------------AGGGA--AGUG-CCCUA--UGAA-ACC--CGGCAACC-A-UCA-ACACG------------------------------------------------------UGUU----GAA-AU--GGUGCCA-AUUC--ACG-CGAAGCG-----UUAU------- +AP008934.1/15667-15765 A-UCUUAUUUCGAG-AAG-C-UG-----------------AGGGA-CUUGG-CCCAG--UGAU-GCU-UCAGCAACCGG-CUG-UGU----------------------------------------------------------------AGU-AC--GGUGCUA-AAAC--CAA-CGA----------UAC------- +CP000001.1/5213243-5213138 G-UCUUAUCAAGAAAAGG-U-GG-----------------AGGGA--CAGG-CCCGA--UGAA-ACC-UUGGCAACA-G-CCG-UAU---------------------------------------------------------AAC----GGA-AU--UGUGCCA-AAUC--CUG-CAGGUAA-----UAAA------- +AE017355.1/388363-388251 U-CUUUAUCAAGAG-AGG-C-AG-----------------AGGGA--CCGG-CCCUU--UGAA-GCC--CAGCAACC-U-CAG-UUUAUA----------------------------------------------------CAAAC----UGA-AU-AGGUGCUA-AUUC--CUG-CAAAAUG-----CAUUG------ +BA000028.3/2437307-2437208 C-UCUUAUCUAGAG-CGG-U-GG-----------------AGGGA--CUGG-CCCUU--UGAA-ACC-GCGGCAACC-U-UCA-UAAUU-------------------------------------------------------AAA----UGA-AA--GGUGCCA-AUUC--CUG-CA-----------GAA------- +AP008934.1/1011112-1011223 C-UCUUAUCCUGAG-UGG-C-GG-----------------AGGGACAUGGA-CCCAA--UGAA-GCC--CAGCAACC-U-CUU-CUUAA------------------------------------------------------UUGA----AGA-AA--GGUGCCA-AACCGUUUG-CAGACAA-----AUAG------- +BA000004.3/1699957-1700066 U-UCUUAUCCAGAG-AGG-U-GG-----------------AGGGA--ACGG-CCCGA--AGAA-ACC-UCAGCAACC-A-GCC-ACGAUC-----------------------------------------------------CUGU----GGU-CA--GGUGCUA-AUUC--CUG-CAAGCAU-----UAUU------- +BA000028.3/2708645-2708539 U-UCUUAUCAUGAG-AGG-C-GG-----------------AGGGA-AAUGG-CCCAA--CGAA-ACC-UCGGCAACA-G-GUU-CUUAU-------------------------------------------------------UAG----AAU-AC--UGUGCCA-AUUC--CAU-CAAGC-------AAAU------- +AP008934.1/318535-318643 A-ACUUAUCCAGAG-AAG-U-UG-----------------AGGGA-AUUGG-CCCUG--UGAA-GCU-UCAGCAACAGA-CUU-UGUAA-------------------------------------------------------AGA----AGU-AC--UGUGCUU-CGUC--CAA-CAAGUAA-----UACU------- +BA000004.3/3427467-3427355 C-UCUUAUCCAGAGUUGG-U-GG-----------------AGGGA--CAGG-CCCGA--AGAA-ACC-CCAGCAACC-A-ACA-CCUGUUAAA-----------------------------------------------CAAAGGU----GAA-AA--GGUGCUA-A--C--CUG-CAAGG-------CGUU------- +AE006470.1/606189-606295 C-UAUCAUCCAGAA-AGG-C-GG-----------------AGGGA--CUGG-CCCUG--CGAA-GCC-UUGGCAACC-U-UCA-UUCCA-------------------------------------------------------CAU----GAG-C---GGUGCCA-AAUC--CAU-CCCGGAG-----GAAA------- +AP006716.1/417999-418100 G-UCUUAUUAAGAGUGAG-U-GG-----------------AGGGA-AUUGG-CCCUA--UGAA-GCU-CCAGCAACU-G-CGC-UUU-----------------------------------------------------------G----CGU-GA--GGUGCUA-AAUC--CAA-CAGG---------AGU------- +BA000028.3/3466520-3466401 C-UCUUAUUGAGAG-UGG-C-UG-----------------AGGGA--CUGG-CCCUG--UGAC-GCC--CGGCAACC-G-UUC-AUCGUAAUUC---------------------------------------------CAGUGAUG----AAU-A---GGUGCUA-AAUC--CUG-CAAAAUACG-GACAGU------- +BA000016.3/2500083-2499978 C-UCUUAUCCAGAG-AGG-U-GG-----------------AGGGAAAAAGG-CCCUA--UGAA-ACC--CGGCAACC-A-GUG-AGAA--------------------------------------------------------AUC----ACU-AC--GGUGCCA-AUUC--CGG-UAAAG-------AAAU------- +AP008934.1/1948647-1948540 C-UCUUAUCACGAG-AGG-U-GG-----------------AGGGA--UGUG-CCCUU--UGAA-GCC--CGGCAACC-G-UCU-GUA---------------------------------------------------------ACA----GAA-AU--GGUGCCA-AUUC--ACA-UAAAGUU-----CAUAG------ +CP000088.1/254824-254964 U-GCUCAUCCAGAG-GGG-U-GG-----------------AGGGA-CACGG-CCCUG--UGAA-GCC-CCGGCAACC-A-UCC-CGGUGGACGUUGCUCGUC-----------------------------AGGUGCGAGGCGGCCG----GGA-CA--GGUGCCA-ACUC--CGU-CCCACUG-----UCAAGGU---- +AP006627.1/1701649-1701759 A-ACUUAUCAAGAG-UGG-C-GG-----------------AGGGA-CCUGA-CCCAA--UGAA-GCC--CGGCAACC-A-GUU-UAUUU------------------------------------------------------GUAA----ACC-AC--GGUGCUA-CAUU--CAG-CAGAGCA-----GCUUU------ +AE017333.1/3080753-3080616 C-UCUUAUCCCGAGCUGG-U-GG-----------------AGGGA--CAGG-CCCAA--UGAA-ACC--CAGCAACC-G-GUU-UCUCUUAUUAAUGGAAAA----------------------------AAACAGUUUCUGAGACA----ACU-AC--GGUGCUA-ACCU-GAUG-CAAGGUGU---UCAAU------- +AE017333.1/1489705-1489804 U-UCUUAUCAAGAGCAGG-C-AG-----------------AGGGA--CAAG-CCCGA--UGAA-GCC--CGGCAACC-G-ACU-UUU---------------------------------------------------------UAA----G-C-AC--GGUGCUA-AUUC--UUG-CAGCU----------G------- +AE017180.1/1014096-1014202 A-ACUUAUCAAGAG-CGA-C-CG-----------------AGGGA--CAGG-CCCGG--UGAC-GUC-GCGGCAACC-U-CCC-CAU---------------------------------------------------------GGG----GGG-AA--GGUGCCA-AUUC--CUG-CGAGACC-----GACA------- +AP006840.1/1830606-1830721 C-UCUUAUCCAGAG-AGG-U-GG-----------------AGGGA-ACUGG-CCCGA--UGAA-ACC--CGGCAACC-C-AGG-ACGCUGCG-------------------------------------------------GGGCGU----CCG-AA--GGUGCCA-ACUC--CAC-CGGCGGC-----CUCAC------ +AP006716.1/14213-14314 A-ACUUAUUAAGAG-AAG-U-GG-----------------AGGGA-CACGG-CCCUG--AGAA-ACU-UCAGCAACC-G-GCG-AUGCA-------------------------------------------------------UAC----G-C-AC--GGUGCUA-CUAC--CAA-CGAGAU----------------- +AE017333.1/1207733-1207622 U-UCUUAUCAAGAG-AGG-C-AG-----------------AGGGA--CUGG-CCCGA--UGAA-GCC-UCAGCAACC-G-GUG-AAUGAAUA-------------------------------------------------UUCAUG----ACC-AA--GGUGCUA-AAUC--CAG-CAAGC-------AGCC------- +BA000028.3/1098099-1097993 U-UCUUAUCCAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCAA--GGAA-GCC-UCGGCAACA-G-ACU-UAUUUG----------------------------------------------------AUUAA----GUA-C---UGUGCCA-AUUC--CAG-UAGCGUA-----AUU-------- +BA000043.1/745485-745383 U-UCUUAUCAAGAG-AGG-G-GG-----------------AGGGA--CUGG-CCCGG--UGAA-CCC-UCAGCAACC-U-GGC-CCG---------------------------------------------------------CGG----CCA-A---GGUGCUA-AAUC--CAGACAGGCGG-----AAG-------- +AP006627.1/1983212-1983311 U-UCUUAUCAAGAG-AAG-U-GG-----------------AGGGA--AUGG-CCCAA--UGAA-GCU-UCAGCAACC-A-GCC-AAC---------------------------------------------------------CAU----GGU-CA--GGUGCUA-AAUC--CAG-CAG----------UUU------- +CP000001.1/334370-334474 U-UCUUAUCCAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUA--CGAU-ACC-UCAGCAACG-G-GUU-UUUU---------------------------------------------------------------AAU-AC--CGUGCUA-ACUC--CAG-CAAGCCU-----AUAA------- +AP006627.1/951406-951512 G-ACUUAUCAAGAG-CGA-C-UG-----------------AGGGA-UUAGG-CCCAA--UGAC-GUC--CAGCAACC-U-CCC-GUU---------------------------------------------------------ACG----GGG-AA--GGUGCCA-AUUC--CUG-CAGAAUG-----GGAU------- +AP006716.1/2100177-2100072 U-UCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--UGUG-CCCUA--UGAA-GCC--CGGCAACC-G-UCU-AGUU--------------------------------------------------------AUA----GAA-AU--GGUGCCA-AUUC--ACA-UAAAGUU-----GAUU------- +AP008934.1/616628-616728 A-ACUUAUCAAGAG-AAG-U-GG-----------------AGGGA--CUGG-CCUGU--GGAU-ACU-UCGGCAACA-U-GAU-UAU----------------------------------------------------------------GCG-----UGUGCCA-AUUC--CAG-UAGCAUC-----AUUU------- +BA000004.3/1348816-1348929 G-ACUUAUCGAGAG-AGG-C-AG-----------------AGGGA--CUGA-CCCGA--UGAU-GCC--CGGCAACC-C-GUU-UGUUAGCC-------------------------------------------------AAGCAA----ACG-AA--GGUGCUA-AUUU--CAG-CAGAAUG-----AUUU------- +CP000141.1/2169978-2169874 C-UCUUAUCAAGAG-UGG-C-GG-----------------AGGGA--CUGG-CCCAA--UGAA-GCC--CGGCAACC-G-GCC-AUAUU------------------------------------------------------UUUG----GCA-AU--GGUGCCA-AUUC--CUG-CGGAU--------UAA------- +AM412317.1/1193313-1193415 U-UCUUAUCAAGAG-CGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-ACC--CGGCAACCAG-UAU-AUAUU-------------------------------------------------------UUA----UAC-AU--GGUGCUA-AAUC--CUG-CAG---------AUUU------- +AM180355.1/1724139-1724245 G-UCUUAUCAAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCUU--UGAA-ACC--CGGCAACC-A-GUA-UAUUUU-----------------------------------------------------AUAU----ACA-UU--GGUGCUA-AAUC--CUG-CAACUAA-----UAUA------- +AAWL01000001.1/327573-327687 C-UUUCAUCAAGAGCUGG-C-UG-----------------AGGGA--CUGG-CCCGA--UGAC-GCC-GCGGCAACC-A-UCG-CAUCUUU--------------------------------------------------GGGUGC----GAA-AC--GGUGCCA-AUUC--CUG-CAGAACG-----GAUA------- +AAJM01000461.1/236-129 U-UCUUAUCCAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCUUA--UGAA-ACC-UCAGCAACAGG-UCU-GCUUA------------------------------------------------------AGUA----GAC-AC--UGUGCUA-AUUC--CAG-CGGGUGA-----UAAU------- +CP000728.1/2062169-2062064 C-UCUUAUCAAGAG-UGG-C-GG-----------------AGGGA-UCAGG-CCCUG--UGAA-GCC--CGGCAACA-G-CUA-GUUGA------------------------------------------------------ACCU----AGA-AA--UGUGCUA-AUUC--CUG-CAGUG--------GAU------- +CP000568.1/2679822-2679717 A-CCUUAUCAAGAG-AGG-C-GG-----------------AGGGA-AUGGG-CCCUA--UGAA-ACC--CGGCAACC-G-GCA-GA----------------------------------------------------------AUU----GUA-UC--GGUGCCA-AUUC--CUA-CAGGAUG-----UAAA------- +AP008230.1/4549598-4549497 U-UCUCAUCCAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC--CGGCAACC-G-GCC-UAU---------------------------------------------------------AUG----GCA-GU--GGUGCUA-AUUC--CAG-CAGGAUU-----AUU-------- +CP000726.1/3620086-3619976 U-UCUUAUCCAGAG-CGG-C-GG-----------------AGGGA--CUGG-CCCUA--UGAA-GCC--CGGCAACCAC-UAA-GGUGUUUU------------------------------------------------AUUACUU----UAA-AC--GGUGCUA-AUUC--CAG-CAGG---------UUA------- +AAOX01000018.1/27020-26864 C-UCUUAUCAAGAGCAGG-C-AG-----------------AGGGA-CUUGG-CCCGA--UGAU-GCC--CAGCAACC-G-ACC-GUAAUUCCAUCGUGAGAUGGGGCGCAAU---------CCUUGCGCCGGAGAAUUCCUCCAUAA----GGC-AC--GGUGCUA-AUUC--CAG-CAGAAAG-----CUUGG------ +AAXV01000005.1/126573-126679 U-UCUUAUCAAGAG-AGA-C-GG-----------------AGGGA--UCGG-CCCGA--UGAA-GUC-UCAGCAACC-A-GCU-CA----------------------------------------------------------AUC----AGU-AU--GGUGCUA-AUUC--CUU-UUGGCAA-----AAUCU------ +AAOX01000014.1/12064-12163 U-UCUUAUCCAGAG-AGG-U-AG-----------------AGGGA--CUGG-CCCUA--UGAC-ACC-UCGGCAGCG----GA-CUGAU-------------------------------------------------------GAA----C-------CGUGCCA-AUUC--CAG-CAGGC-------AGAU------- +CP000612.1/2418052-2417945 U-ACUUAUCAAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-GCC--CGGCAACC-G-GCC-AUUGG-------------------------------------------------------AUG----GCG-GC--GGUGCCA-ACUC--CUG-CAGGACU-----UUUA------- +CP000673.1/1716322-1716209 U-UCUUAUCAAGAG-AGA-C-GG-----------------AGGGA--CUGG-CCCUA--UGAU-GUC--CGGCAACCAG-AAG-AUUUU-------------------------------------------------------UAU----UUC-AU--GGUGCUA-AUUC--CAG-CAGGUAU-----UAAUAUG---- +CP000673.1/2974771-2974666 G-CUUUAUCAAGAG-CGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-GCC--CAGCAACC-A-GUA-UUGUUUU---------------------------------------------------UUAAU----ACA-UU--GGUGCUA-AUUC--CUA-CAGCU----------U------- +AM180355.1/174147-174250 A-CCUUAUCAAGAG-AGG-C-UG-----------------AGGGA--UAGG-CCCUG--UGAA-GCC--CAGCAACC-A-CCC-AAA---------------------------------------------------------UGG----GAA-AA--GGUGCUA-AUUC--CUA-CAAGACA-----AAAG------- +CP000724.1/4004549-4004448 A-ACUUAUCAAGAG-AAA-C-UG-----------------AGGGA--CUGG-CCCGA--UGAU-GUU-UCAGCAACCAC-ACA-UAU----------------------------------------------------------------GUG-AC--GGUGCUA-AAUC--CAG-CAGAACA-----UAGU------- +AAXV01000010.1/2942-2843 U-UCUUAUCAAGAG-AAG-C-AG-----------------AGGGA--CUGG-CCCAA--UGAA-GCU-UCAGCAACC-A-ACU-UUUU---------------------------------------------------------------GUC-A---GGUGCUA-AAUC--CAG-AAGACCG-----UUGA------- +CP000724.1/763663-763763 G-CCUUAUCAAGAG-UGA-U-GG-----------------AGGGG-AAGGG-CCCGA--UGAA-AUC--CGGCAACC-A-UAG-AG-----------------------------------------------------------------UGU-AU--GGUGCUA-AGUC--CCU-CAGAAU------UUUG------- +AAXV01000011.1/30443-30546 U-UCUUAUCAAGAG-AGA-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-AUC-UCGGCAGCG-G-AAC-UAUUA-------------------------------------------------------AGU----UAC-----UGUGCCA-AAUC--CAG-CAAGCAA-----UGUU------- +AAOX01000002.1/320062-320165 U-UCUUAUCAAGAG-AGA-C-GG-----------------AGGGG-UAUGG-CCCGA--AGAA-GUC-UCGGCAGCA-G-GUU-CAU---------------------------------------------------------CCG----GAC-AC--UGUGCCA-AAUC--CAU-CAGGC--------AAA------- +ABCB02000018.1/9340-9436 C-CCUUAUCAAGAG-AGG-C-GG-----------------AGGGA-ACAGA-CCCUG--UGAU-GCC--CGGCAACC-U-GCG-GUUU---------------------------------------------------------------GCA-A---GGUGCCA-AUUU--CUG-CGG----------GAA------- +CP000685.1/4776282-4776182 U-ACUUAUCCAGAA-AGA-C-UG-----------------AGGGA-AUAGG-CCCAA--UGAA-GUC-UUAGCAACC-U-GUU-GC----------------------------------------------------------CGA----AUA-A---GGUGCUA-AAUC--CUU-CCGC---------UAU------- +CP000557.1/1285675-1285779 G-UCUUAUCAAGAG-UGG-G-CG-----------------AGAGA-ACGGG-CUUGA--UGAC-CCC-ACAGCAACC-U-GCC-GCU-----------------------------------------------------------G----GCA-A---GGUGCUA-AAAC--CCG-CAAAGCG-----AGUU------- +AE015927.1/303338-303443 C-UCUUAUCGAGAG-AGG-U-GG-----------------AGGGA-AAGGG-CCCUA--UGAA-ACC--CGGCAACC-A-AUA-UUUUUA----------------------------------------------------GAAGU----AUU-AA--GGUGCCA-AUUC--CUG-CAGAA----------A------- +AE001437.1/453563-453665 U-UCUUAUCAAGAG-UGA-C-GG-----------------AGGGA--UAGG-CCCUA--UGAA-GUC--CGGCAACA-U-CCA-AUUAU-------------------------------------------------------UUU----GGA-GA--UGUGCUA-AUUC--CUA-CAGG---------UUU------- +CP000673.1/503077-503184 U-UCUUAUCAAGAG-CGG-C-GG-----------------AGGGA--UAGG-CCCUA--UGAA-GUC--CGACAACC-G-ACA-UUUUG-------------------------------------------------------UGC----AUC-----GGUGUCA-AUUC--CUA-CAGAGUG-----UGUUA------ +AAOX01000055.1/439-545 U-UCUUAUCGAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCUG--UGAU-ACC--CGGCAGCC-G-CUG-ACUUA-------------------------------------------------------GUC----AGA-AU--GGUGCUA-AAUC--CAG-CAAAGCG-----CAAU------- +CP000612.1/107660-107768 C-UCUUAUCCUGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-ACC--CAGCAACCAU-UCG-GUUAA------------------------------------------------------GCCC----GGA-CU--GGUGCUA-AUUC--CUG-CAGAAGA-----UAUU------- +AAWL01000002.1/146610-146509 U-ACUCAUCAAGAGUUGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC-GCGGCAACCAU-UUG-GCAAG-------------------------------------------------------UCC----AAA-AC--GGUGCCA-AUUC--CGG-CG-----------UAC------- +AP008230.1/4551167-4551265 C-UCUUAUCAAGAG-AGG-C-GG-----------------AGGGA--CUGG-CCCCA--UGAA-GCC--CGGCAACC-U-ACA-UAU----------------------------------------------------------------GUG-A---GGUGCUA-AAUC--CAGAGAACC--------AUC------- +CP000673.1/1915422-1915314 U-UCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAU-GCC--CGGCAACC-U-GAA-UGUAUU----------------------------------------------------UACAU----UCA-AU--GGUGCUA-AUUC--CAG-CAGGUAA-----UAUA------- +AP009389.1/1533734-1533850 C-UCUUAUCCGGAG-UGG-C-GG-----------------AGGGA--CUGG-CCCUA--UGAA-GCC--CGGCAACC-U-UUG-GGUAUAUAG----------------------------------------------GCGUACCC----AAA-AA--GGUGCUA-AUUC--CUG-CAGGAGA-----UUUA------- +CP000673.1/3104226-3104112 U-UCUUAUCAAGAG-AGG-C-GG-----------------AGGGA--CUGG-CCCUA--UGAA-ACC--CAACAACC-G-GCA-UUUAUUU--------------------------------------------------CAAUAU----GUA-UC--GGUGUUA-AUUC--CUG-CAGAGUU-----AAUUU------ +AAOX01000006.1/30687-30791 C-UCUUAUCCAGAG-AGG-C-GG-----------------AGGGA-AUUGG-CCCUA--UGAA-GCC-UCGGCAGCA-G-ACU-CCUUG-------------------------------------------------------CGA----G-A-AC--UGUGCCA-AAUC--CAA-CAAGCGG-----AAG-------- +AE015927.1/1456770-1456662 A-GCUUAUUAAGAG-CGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-GCC--CGGCAACC-U-GUA-UAUGUGUUU-----------------------------------------------GCAUAUU----AUA-A---GGUGCUA-AAUC--CUG-CGGUG----------U------- +AE017194.1/1084280-1084386 U-UCUUAUGUUGAG-AAG-U-GG-----------------AGGGA--CGGG-CCCUA--UGAA-ACU-UCGGCAACC-U-CGU-AUG---------------------------------------------------------AGA----CGA-AA--GGUGCCA-AAUC--CUG-CAGGUGA-----AGAA------- +AE017194.1/3299167-3299061 U-UCUUAUUAAGAG-AGA-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-AUC-UCAGCAACA-G-GCU-AUA---------------------------------------------------------AAA----GUA-C---UGUGCUA-AGUC--CAG-CAAACGU-----AUGAA------ +AE015927.1/1226200-1226097 A-UCUUAUCAAGAG-CGG-U-UG-----------------AGGGA--CUGG-CCCUA--UGAA-ACC--CAGCAACC-U-AUA-CACAA-------------------------------------------------------AGU----AUA-AA--GGUGCUA-ACUC--CAG-CAGGA--------AAU------- +AAXV01000007.1/42365-42470 C-UCUUAUCAAGAG-UAG-C-UG-----------------AGGGA--CUGG-CCCUA--UGAA-GCU--CGGCAACC-U-CCU-UUUAU-------------------------------------------------------AAA----GGA-A---GGUGCUA-AAUC--CUG-CAAACGA-----AAUU------- +AAOX01000002.1/340881-340984 C-ACUUAUCUAGAG-UGG-C-UG-----------------AGGGA--CUGG-CCCAU--CGAA-GCC--CGGCAACC-U-GCU-AAAA---------------------------------------------------------------GCA-A---GGUGCCA-AUUC--CAG-CAAAAUG-----UCCAG------ +AAXG02000006.1/101826-101729 G-CCUUAUCAAGAG-CGG-U-GG-----------------AGGGA--ACGG-CCCGA--UGAA-ACC--CGGCAACC-U-GCG-CAU---------------------------------------------------------UGC----GCA-A---GGUGCCA-AAUC--CGG-CGA----------GAG------- +CP000673.1/818867-818971 A-ACUUAUUAAGAG-AGG-C-GG-----------------AGGGA--AAGG-CCCUA--UGAA-GUC--CGGCAACC-A-GCA-UUAUG------------------------------------------------------UAAU----GUA-UU--GGUGCUA-AAUC--CUG-CAGCAUU-----GUA-------- +AE001437.1/1976371-1976471 U-UCUUAUCAAGA--AGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-GCC--UGACAACC-G-GCA-AAU----------------------------------------------------------------GUA-C---GGUGUUA-AUUC--CUG-CAAAACU-----UAUU------- +AE001437.1/2914841-2914733 G-UCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-ACC--CAACAACCAG-CAU-UUUUUAA---------------------------------------------------UUAGA----UGU-AU--GGUGUUA-AUUC--CUG-CAAAGUU-----AAU-------- +CP000232.1/2070462-2070570 C-UCUUAUCGAGAGCUGG-C-GG-----------------AGGGA--CUGG-CCCGA--UGAA-GCC--CGGCAACC-G-GCC-UCUUAGA---------------------------------------------------ACCCA----GGU-AC--GGUGCCA-AUUC--CUG-CAGGA--------UUU------- +AAEW02000009.1/42224-42117 G-UGUUAUCACGAG-UGG-U-GG-----------------AGGGA--AUGG-CCCUU--UGAA-ACC-ACAGCAACCGG-UCC-UGACGUU--------------------------------------------------CAGGAU----GAC-A---GGUGCUA-AUUC--CAC-CCCCG----------C------- +AAWL01000026.1/22109-22215 C-UCUUAUCAAGAG-CGG-U-GG-----------------AGGGA--CUGG-CCCUG--UGAA-GCC-GCGGCAACC-G-GCA-GCAA--------------------------------------------------------UGC----GUC-U---GGUGCCA-AAUC--CAG-CAGAAUC-----UUCG------- +CP000724.1/968949-968838 C-UCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC--CGGCAACCAC-GAA-UUGUUUU--------------------------------------------------UGCAAU----UCG-AA--GGUGCUA-AUUC--CAA-CAACAC------UUAU------- +ABCF01000005.1/97205-97306 U-UCUUAUCGAGAG-AGG-C-AG-----------------AGGGA--CUGG-CCCUG--UGAA-GCC-UCGGCAGCGGA-CUA-UU----------------------------------------------------------UAU----AGU-AC--CGUGCCA-AAUC--CAG-CAAGC---------AU------- +AAXV01000019.1/61222-61331 A-UCUUAUCAAGAG-AAG-C-AG-----------------AGGGA-UUUGG-CCCGA--UGAC-GCU-UCAGCAACC-U-CUA-ACAAA------------------------------------------------------UGUU----AGA-AA--GGUGCUA-AUUC--CAG-CAAAGGU-----UUUU------- +AAOX01000038.1/20734-20635 U-UCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC--CGGCAACC----GG-CAAUA-------------------------------------------------------GAA----C-------GGUGCUA-AUUC--CAG-CAGAGCA-----UGAU------- +CP000612.1/3367128-3367031 U-GCUCAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC--CGGCAACC-------UCACG-------------------------------------------------------UAA------------GGUGCCA-AGUC--CUG-CGGGAAG-----AAUA------- +BA000028.3/3200764-3200871 U-UCUUAUCGAGAG-AAG-C-UA-----------------AGGGA-CCUGG-CCUGU--UGAC-GCU-UCAGCAACC-U-CUA-UCUCC-------------------------------------------------------AUU----AGA-AA--GGUGCUA-CCUC--CAG-CAAGAU------GUAU------- +AAOX01000006.1/96737-96624 U-UCUUAUCAAGAG-AGG-C-AG-----------------AGGGU--AUGG-CCCUG--UGAA-GCC-UCAGCAACC-U-UCA-AUGGAUA---------------------------------------------------AUAUU----GAA-AA--GGUGCUA-AUUC--CUG-CAGGUCC-----UUUAU------ +BA000028.3/2856865-2856757 U-CCUUAUCAAGAGUCGG-G-GG-----------------AGGAA-UCUGG-UCCAU--UGAU-CCC-GCAGCAACCAG-UUA-CAAUG------------------------------------------------------AAGU----AAC-AU--GGUGCUC-AUUC--CAG-CAAGC--------GUA------- +CP000673.1/3384182-3384086 U-UCUUAUUUUGAG-AGA-C-GG-----------------AGGGA--CUGG-CCCUA--UGAU-GUC--CGGCAACC-U-GAA-UAU----------------------------------------------------------------UUA-A---GGUGCUA-AUUC--CAG-CAGG---------UAU------- +CP000382.1/316300-316411 A-UCUUAUCAAGAG-UGG-U-UG-----------------AGGGA--CUGG-CCCUA--UGAA-ACC--CGGCAACA-A-CUA-AUUUUCAU------------------------------------------------UUAAAUU----AGU-AA--UGUGCUA-AUUC--CAG-CAGGA-------AAUU------- +AE001437.1/1073888-1073785 U-CCUUAUCAAGAG-AAA-C-GG-----------------AGGGA--CUGG-CCCAA--UGAU-GUU-UCAGCAACC-A-AGG-UUUU--------------------------------------------------------AUA----CUU-AU--GGUGCUA-AUUC--CAG-CAGGA--------UAU------- +ABDQ01000003.1/211832-211918 U-GCUUAUCUAGAG-UGG-C-GG-----------------AGGGA--CUGG-CCCUU--UGAA-GCC--CAGCAACC-U-AUA-UUU---------------------------------------------------------AUU----AUG-U---GGUGCUA-AUUC--CAG------------------------ +CP000232.1/1354284-1354167 C-UCUUAUCGAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-GCC--CGGCAACC-C-GCU-CUCCUGGUUU---------------------------------------------CUCCGGGG----GCG-AC-AGGUGCCA-AUUC--CUG-CAGGGCA-----GAAG------- +AAXV01000007.1/124740-124627 C-UCUUAUCAAGAG-CGG-C-GG-----------------AGGGA--UAGG-CCCUA--UGAU-GCC--CGGCAACC-A-GUA-GGUGAUG---------------------------------------------------AACUU----ACU-AA--GGUGCUA-AUUC--CUA-CAGAUUC-----UUACU------ +ABCF01000016.1/2236-2349 C-UCUUAUCGAGAG-CGG-C-GG-----------------AGGGA-UUAGG-CCCGA--UGAA-GCC--CGGCAACC-U-ACA-GGCAGUUU-------------------------------------------------CUGCUU----GGA-AA--GGUGCUA-CAUC--CUA-CAGGCUC-----AAUG------- +CP000612.1/2872894-2873007 U-UCUUAUCCAGAG-AGG-C-UG-----------------AGGGA--CUGG-CCCUG--AGAC-GCC--CGGCAACC-U-UCU-UAGGCAUU------------------------------------------------UAUCUAA----GAA-A---GGUGCUA-AUUC--CUG-CAGAAGA-----AUAA------- +AP009389.1/251789-251896 U-UCUUAUCGAGAG-AAG-G-GG-----------------AGGGA--CGGA-CCCAA--UGAA-CCU-UCGGCAACC-U-UCA-GGCUUGA--------------------------------------------------AGGCCU----GAA-AA--GGUGCCA-AUUU--CCG-CCGGG----------U------- +CP000142.2/516461-516352 U-CUUUAUCGAGAG-UGG-U-GG-----------------AGGGA--UAGG-CCCUG--UGAA-ACC-ACAGCAACC-G-AUU-CGCCGGC--------------------------------------------------GCGAAU----GUC-A---GGUGCUA-AUUC--CUA-CCCCUUC-----AACA------- +AE015927.1/2676955-2676853 U-UCUUAUCAAGAG-AGG-C-GG-----------------AGGGA--CUGG-CCCUA--UGAA-ACC--CGGCAACC-A-AAA-AUAAU-------------------------------------------------------AAU----UUU-AA--GGUGCCA-AUUC--CAG-CAGG---------UGA------- +CP000232.1/1204935-1204832 G-GCUUAUCGCGAG-AGG-U-GG-----------------AGGGA--GGGC-CCCGA--UGAA-ACC--CGGCAACC-C-CGC-UAUUU-------------------------------------------------------AGC----CGG-AA--GGUGCCA-AGUG--CCG-CAGGA--------AAC------- +CP000673.1/1916685-1916789 U-UCUUAUCAAGAG-AGG-U-AG-----------------AGGGA--CUGG-CCCUG--UGAU-ACC--CGGCAACC-U-UAU-UG----------------------------------------------------------UUU----UCA-AU--GGUGCUA-AUUC--CAG-CAGGCAU-----GUAU------- +AAOX01000005.1/171326-171162 C-UCUUAUCGAGAGCAGG-C-GG-----------------AGGGA-UUUGG-CCCGA--UGAA-GCC--CAGCAACC-G-ACC-GUAAUUCCGUUGUGAAACGGGGCGCAGCAA----GAUUUGCGCCGGUAUGUAAAUACCUUUAA----GGC-AC--GGUGCUA-AUUC--CAA-CAGAGGA-----GAUUUU----- +AAXV01000033.1/3690-3784 C-UCUUAUCAAGAU-AGG-U-GG-----------------AGGGA-CUUGG-CCCAA--UGAA-GCC-UCGGCAACC-------GAAAC-------------------------------------------------------AUA------------GGUGCCA-CUUC--CAA-CCGAU----------G------- +AAOX01000002.1/320243-320340 C-ACUUAUCCAGAG-AGG-C-GG-----------------AGGGA--CUGG-CCCGA--UGAA-GCC-UCGGCAGCAGG-UCU-GUU----------------------------------------------------------------GAC-AC--UGUGCCA-AUUC--CA--CCGGU----------A------- +CP000482.1/3869976-3869870 U-GCUUAUCAAGAG-UGG-U-GG-----------------AGGGA--AAGG-CCCUG--UGAA-ACC-ACAGCAACC-G-GCC-GUCAU-------------------------------------------------------GGC----GCC-A---GGUGCUA-AUUC--CUG-CCGUCAG-----GCAA------- +CP000698.1/4591678-4591570 G-CUUUAUCGAGAG-UGG-U-GG-----------------AGGGA--AAGG-CCCUG--UGAA-ACC-ACAGCAACC-G-GUU-CGCGAAA--------------------------------------------------GCGAAU----GCC-A---GGUGCUA-AAUC--C---UGCCGAC-----UGAC------- +AL009126.3/3997775-3997881 A-CCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAU-ACC--CGGCAACC-G-CUG-UUUCA-------------------------------------------------------AAC----AGA-AU--GGUGCUA-AAUC--CUU-AAGAACA-----UUGC------- +CP001097.1/2001878-2001771 C-UAUCAUCGAGAA-AGG-U-GG-----------------AGGGA--CUGG-CCCUG--AGAA-GCC-UUGGCAACC-G-UCA-CGCAC-------------------------------------------------------AGU----GAU-U---GGUGCCA-AUUC--CAU-CCCGGAC-----UGCG------- +CP001336.1/1583758-1583658 C-UCUUAUCCAGAGUAGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC--CGGCAACC-G-ACA-UGAAA-------------------------------------------------------AUG------C-AC--GGUGCUA-AAUC--CUG-CAG---------GAAA------- +CP001022.1/2707752-2707649 C-ACUUAUCCAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUA--CGAA-ACC-UCGGCAACA-G-ACU-CAUUA-------------------------------------------------------UGA----G-C-AC--UGUGCCA-AUUC--CAU-CAGAC--------AAU------- +AL009126.3/1258304-1258424 U-UCUUAUCGUGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUU--AGAA-ACC-UCAGCAACC-G-GCU-UGUUUUGCAU--------------------------------------------UUGCAAAGC----GCC-AA--GGUGCUA-AAUC--CAG-CAAGCGU-----UUUUU------ +AE008691.1/500243-500352 C-UCUUAUCAAGAG-AGG-U-GG-----------------AGGGA-AAGAG-CCCGA--UGAA-ACC--CGGCAACC-U-GUC-CUUUU-------------------------------------------------------AAG----GAU-AA--GGUGCCA-AUUC--UCU-CAGAAGA-----UUUUU------ +CP001390.1/1543852-1543744 U-GCUUAUCAAGAG-UGG-U-GG-----------------AGGGA-AAAGG-CCCUG--UGAA-ACC-ACAGCAACC-G-GUU-GAUCCGAAA-----------------------------------------------GGACGGC----GUC-A---GGUGCUA-AAUC--CUG-CCCAU------------------ +ABDU01000083.2/79240-79352 U-UCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUG--UGAA-ACC--CAGCAACC-U-AUG-GUAUAAGUAUU-------------------------------------------UUUUAUGUC----AUA-AC--GGUGCUA-AAUC--CUG-CAG----------GUU------- +AL009126.3/1424683-1424527 C-UCUUAUCGAGAGUUGG-G-CG-----------------AGGGA-UUUGG-CCUUU--UGAC-CCCAAAAGCAACC-G-ACC-GUAAUUCCAUUGUGAAAUGGGGCGCAUUU------UUUUCGCGCCGAGACGCUGGUCUCUUAA----GGC-AC--GGUGCUA-AUUC-CAUU-CAGAU-------CUG-------- +ABDT01000114.2/68234-68332 C-UCUUAUCAAGAG-AGG-U-GG-----------------AGGGA-UAGGG-CCCAG--UGAA-ACC--CGGCAACC-U-GUA-UAU----------------------------------------------------------------ACA-A---GGUGCCA-AUUC--CUG-UAGAU--------GUA------- +CP001089.1/3288078-3288187 U-UCUUAUCAAGAG-CGA-C-CG-----------------AGGGA--CUGG-CCCGG--UGAC-GUC-GCGGCAACC-C-GCC-UGA---------------------------------------------------------AAA----GGU-AC--GGUGCCA-AUUC--CAG-CAAAGCC-----GCACAG----- +CP000879.1/1211576-1211465 U-CCUUAUCGAGAG-AGG-C-GG-----------------AGGGA--CUGG-CCCGA--AGAA-GCC--CGGCAACC-U-GCA-UAAUUUAAC----------------------------------------------AAAAUUAU----GCA-AU--GGUGCUA-AAUC--CUG-CAGAG---------AA------- +ACOM01000005.1/822103-822219 A-ACUUAUCAAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-ACC--CGGCAACC-G-ACA-UUUAGUUCAU--------------------------------------------UUACUAUAU----GUG-AC--GGUGCUA-AUUC--CUG-CAGUUUA-----UUUA------- +AE008691.1/2076682-2076573 C-UCUUAUCAAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC--CGGCAACC-G-GCA-CGUA--------------------------------------------------------AGU----GCU-U---GGUGCCA-AUUC--CUG-CAGGUUGG--GGUUACC------ +CP001098.1/2431377-2431263 C-AAUCAUCAAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCGA--AGAA-GCC--CGGCAACC-U-ACC-UGAGUUU--------------------------------------------------AGCAAG----GUA-A---GGUGCCA-AAUC--CUG-CAUUCUG-----GGGAAU----- +CP000909.1/4069333-4069227 U-GCUCAUCGAGAU-GGG-C-UG-----------------AGGGA--CUGG-CCCGA--UGAC-GCC--CGGCAACC-C-CCG-CCA----------------------------------------------------------------GGG-AA--GGUGCCA-AAUC--CAG-CGGCAAU-----GGAUAU----- +AL009126.3/3364503-3364397 C-UCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--AGUG-CCCUA--UGAA-GCC--CGGCAACC-A-UCA-ACACU-------------------------------------------------------GUU----GAA-AU--GGUGCCA-AUUC--ACA-CGAAGC------GUUC------- +CP001022.1/2804795-2804898 U-UUUUAUCGCGAG-AGA-C-GG-----------------AGGGA--CUGG-CCCGA--UGAU-GUU-UCGGCAGCG-G-ACG-AUUAA-------------------------------------------------------AUC----GUA-C---UGUGCCA-AAUC--CAG-CAAGCUG-----CGG-------- +CP001089.1/3739157-3739264 U-GCUUAUCAAGAG-UGG-U-GG-----------------AGGGAUAAG-G-CCCGA--UGAA-ACC-ACAGCAACC-G-GCC-CUGCGACAA-----------------------------------------------ACAGGGC----GCC-A---GGUGCUA-AAUC--CUG-----CCG-----CAAG------- +CP001022.1/2309368-2309263 C-UCUUAUCGAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC--CGGCAACC-G-CGG-AAUUU-------------------------------------------------------AUU----CCG-AAGUGGUGCUA-AUUC--CAG-CAGAC--------GAU------- +AP008230.1/5317569-5317463 U-UCUUAUCAAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC--CAGCAACC-G-GUA-UUCGGA----------------------------------------------------UGAAU----ACA-AC--GGUGCUA-AUUC--CUG-CGAUG--------GAA------- +Y09476.1/38002-37885 U-UCUUAUCAAGAG-AAG-C-AG-----------------AGGGA--CUGG-CCCGA--CGAA-GCU-UCAGCAACC-G-GUG-UAAUGGCGAU---------------------------------------------CAGCCAUG----ACC-AA--GGUGCUA-AAUC--CAG-CAAGCUC-----GAAC------- +AACY020322622.1/575-479 U-ACUUAUCAAGAA-AGG-U-GG-----------------AGGGA-AAAGG-CCCUU--UGAA-ACC-UUAGCAACC-C-CAAAUU-----------------------------------------------------------------AGG-AA--GGUGCUA-AAUC--CAG-AU----------GUAA------- +CP001124.1/432444-432343 U-GCUUAUCUAGAG-UGG-U-GG-----------------AGGGA--AAGG-CCCUG--CGAA-GCC-ACAGCAACC-G-GCC-CAGAAA----------------------------------------------------UGGGC----GAC-A---GGUGCUA-AAUC--CUG-----CCG-----AAAG------- +CP001110.1/965443-965552 C-UAUCAUCCAGAA-AGG-U-GG-----------------AGGGA--CUGG-CCCUG--AGAA-GCC-UUGGCAACCGU-CAU-UGCUC-------------------------------------------------------UAA----UGA-GC--GGUGCCA-AUUC--CAU-CCCGGCA-----UAAA------- +CP001022.1/2977132-2977031 U-UCUUAUCCAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUU--UGAA-GCC-UCAGCAACAGG-UCG-AAA----------------------------------------------------------------GAC-AC--UGUGCUA-AUUC--CUG-CGGGUGU-----UGUA------- +ABDT01000037.2/9251-9359 U-ACUUAUCAAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCUG--UGAA-ACC--CGGCAACC-A-AUA-UUUAUUA--------------------------------------------------GAUGAU----AUG-A---GGUGCCA-AAUC--CUG-CAGUUUU-----UAUG------- +CP001022.1/449125-449227 C-UCUUAUCGUGAGUUGG-C-AG-----------------AGGGA-AUUGG-CCCGA--AGAC-GCC-GCAGCAACC-G-ACC-AUCC---------------------------------------------------------------GGC-AC--GGUGCUA-CAUC--CAA-CAGAC--------AUU------- +CP001022.1/2949654-2949549 U-UCUUAUCAAGAG-AAG-U-CG-----------------AGGGA--ACGG-CCCGA--AGAC-ACU-UCAGCAACC-C-CGC-GCG---------------------------------------------------------UAG----CGG-AA--GGUGCUA-CUUC--CUA-AAAGGAA-----UUUU------- +CP000853.1/102837-102950 C-UUUUAUCGAGAG-AGG-U-GG-----------------AGGGA--AAGG-CCCUA--UGAA-ACC-UCGGCAACC-U-GCA-AACGUAU--------------------------------------------------UUGUUU----GAA-AA--GGUGCCA-AUUC--CUA-CUCUAAG-----UGAA------- +AL009126.3/1426876-1426976 U-UCUUAUCAAGAGCAGG-C-AG-----------------AGGGA--CGAG-CCCGA--UGAA-GCC--CGGCAACC-G-ACU-UAU---------------------------------------------------------AAA----G-C-AC--GGUGCUA-AUUC--UUG-CAGCU--------AGC------- +CP000875.1/2997482-2997580 C-UCUCAUCGAGAU-GGG-C-AG-----------------AGGGA--CUGG-CCCGA--CGAA-GCC--CGGCAACC-C-CAU-UAUU---------------------------------------------------------------UGG-AA--GGUGCCA-AAUC--CUG-CAGG---------UUC------- +CP001022.1/2505940-2506043 U-ACUUAUCGAGAG-CGA-C-CG-----------------AGGGA-UUAGG-CCCAA--CGAC-GUC--CGGCAACC-A-CCU-UUAA---------------------------------------------------------------GGA-AC--GGUGCCA-CAUC--CUA-CAGAAUG-----UUUC------- +AL009126.3/3999166-3999272 U-CCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUG--CGAU-ACC--CGGCAACC-G-CUG-UUU---------------------------------------------------------AAC----AGA-AU--GGUGCUA-AAUC--CUU-UAGAGCA----AUGAU------- +CP000875.1/1061086-1061193 A-ACUCAUCCAGAG-GGG-U-GG-----------------AGGGA--UCGG-CCCUA--UGAA-ACC-CCGGCAACC-G-CAG-GCAGCAA---------------------------------------------------UGCUU----GGA-CU--GGUGCUA-AGUC--CGA-CAGA---------AUC------- +AE008691.1/1750369-1750270 C-UCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC--CGGCAACC-A-GCC-UU----------------------------------------------------------AGG----GCA-U---GGUGCCA-AUUC--CUG-CAGCG-------GUUU------- +ABDT01000031.2/132-23 U-UUUUAUCAAGAA-AGA-C-AG-----------------AGGGA--CUGG-CCCUA--UGAA-GUC--UAGCAACC-U-GAA-UUAUUA----------------------------------------------------AUUAA----UUU-AA--GGUGCUA-AUUC--CAG-CAGAUAU-----UUUA------- +AL009126.3/3129333-3129195 C-UCUUAUCCCGAGCUGG-C-GG-----------------AGGGA--CAGG-CCCUA--UGAA-GCC--CAGCAACC-G-GUU-UCUCUGUUAUUUAUUAUG----------------------------UUCAACUGAGUGAGACA----ACC-AA--GGUGCUA-ACCU-GUUG-CAAGGUU-----GUAUG------ +AP008955.1/3935954-3935848 U-UCUUAUCCAGAG-AGG-U-GG-----------------AGGGU--CUGG-CCCGA--UGAA-GCC--CGGCAACC-G-UUG-CAUAU-------------------------------------------------------UGC----AAC-AA--GGUGCCA-AUUC--CUG-CGAGACG-----UUUC------- +ACML01000054.1/24739-24633 C-UCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--UCGG-CCCUA--UGAA-ACC-UCGGCAACC-C-CUA-UUUUA-------------------------------------------------------UUU----AGG-AA--GGUGCCA-AUUC--CUU-UAGAAUU-----UA-A------- +AP009049.1/1342262-1342152 U-UCUUAUCCAGAG-UGG-C-GA-----------------AGGGA--CUGG-CCCUA--UGAU-GCC--CAGCAACC-U-GAA-UGAUUUUU-------------------------------------------------CAUCAU----UCA-AC--GGUGCUA-AUUC--CAG-CAGGUAU-------AA------- +ACDK01000006.1/20557-20663 G-UCUUAUCAAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-GCC--CAGCAACC-A-AGA-AUUUUAA--------------------------------------------------UCGAUU----CUU-AA--GGUGCUA-AAUC--CUG-CAGGA----------A------- +CP000924.1/750630-750734 C-UCUUAUCGAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC--CGGCAACC-G-GCA-UUUUAU-----------------------------------------------------AUGC----GUC-UU--GGUGCCA-AUUC--CAG-CAGCG---------UU------- +ACMX01000011.1/17693-17806 C-UCUUAUCCAGAG-AGG-C-GG-----------------AGGGA--CUGG-CCCUA--UGAU-GCC--CGGCAACCGA-GCU-UAUGAAU---------------------------------------------------UAUAA----GCU-AA--GGUGCUA-AUUC--CUG-CAAAACG-----AUUUU------ +CP000448.1/1653165-1653067 C-UCUUAUCCAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC--CGGCAACC-G-CCU-GAA-----------------------------------------------------------A----GGU-AU--GGUGCCA-AAUC--CUG-CAGGA---------GG------- +ABEZ02000013.1/193212-193110 A-CCUUAUCAAGAG-AGG-C-UG-----------------AGGGA--CAGG-CCCUA--UGAA-GCC--CAGCAACC-A-CUU-GG----------------------------------------------------------AAA----AGG-AA--GGUGCUA-AAUC--CUG-CUAGAGA-----GAA-------- +CP000764.1/3033666-3033778 U-UCUUAUCUAGAG-AGG-U-AG-----------------AGGGA--CUGG-CCCUA--UGAC-ACC-UCAGCAACC-A-UUA-ACAAAC----------------------------------------------------UUGUU----AAU-AA--GGUGCUA-AUUC--CAG-CAAAUUA-----UCAAA------ +CP001078.1/2736261-2736158 U-UCUUAUCGAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-ACC--CGGCAACCAA-UAU-AUUAU-------------------------------------------------------AUA----UAU-AA--GGUGCUA-AAUC--CUG-CAGUA---------AG------- +CP000923.1/995529-995640 C-UCUUAUCAAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC--CGGCAACC-G-GCA-UUUAU------------------------------------------------------AUGC----GUC-U---GGUGCCA-AAUC--CUG-CAGGUUA-----GAUUAU----- +ACMW01000090.1/86610-86722 U-UCUUAUCUAGAG-AGG-U-AG-----------------AGGGA--CUGG-CCCUA--UGAC-ACC-UCAGCAACC-A-UUA-ACACGU----------------------------------------------------UCGUU----AAU-AA--GGUGCUA-AUUC--CAG-CAAAUUG-----UGAAA------ +ABWP01000002.1/3034-3135 A-CCUUAUCAAGAG-AGG-C-UG-----------------AGGGA--CAGG-CCCGA--UGAA-GCC--CGGCAACC-A-CCC-AUA---------------------------------------------------------AGG----GAA-AA--GGUGCUA-AUUC--CUA-CAGGA--------UUU------- +ACMV01000059.1/168768-168876 A-GCUUAUCAAGAG-AAG-C-GG-----------------AGGGA-ACUGG-CCCUA--CGAA-GCU--CAGCAACC-U-GCU-UAUAA-------------------------------------------------------GAA----GCA-A---GGUGCUA-AGUC--CAG-CAAAAUG-----GCAUC------ +CP000813.1/1116941-1116823 U-UCUUAUCAAGAG-AGG-C-AG-----------------AGGGA--CUGG-CCCUG--UGAA-GCC-UCAGCAACC-G-GUG-UAGUAGAAAUCU-----------------------------------------AUUUUCUAUG----ACC-AA--GGUGCUA-AAUC--CAG-CAAGC--------AAC------- +CP000727.1/1728869-1728972 U-ACUUAUCAAGAG-AGG-C-GG-----------------AGGGA--CUGG-CCCUG--UGAA-GCC--CAGCAACC-U-AUA-UGAAAG----------------------------------------------------UGAAU----AUA-A---GGUGCUA-AAUC--CUG-CAGCA----------U------- +ACMP01000006.1/18282-18169 C-UCUUAUCAAGAG-UGG-C-GG-----------------AGGGA--CUGG-CCCGA--UGAU-GCC--CGGCAACCGA-GCU-UAGAACU---------------------------------------------------UAUAA----GCU-AA--GGUGCUA-AUUC--CUG-CAGAACG-----AUUUU------ +CP001615.1/763985-763879 C-UCUUAUCAAGAG-AGG-C-UG-----------------AGGGA--CUGG-CCCUA--UGAC-GCC--CAGCAACC-G-CGG-AGCAA-------------------------------------------------------UCC----GAA-AU--GGUGCUA-AUUC--CAG-CAAGGUG-----AGAA------- +ABRX01000004.1/223227-223118 C-UCUUAUCAAGAG-AGG-C-AG-----------------AGGGA--CUGG-CCCUA--UGAC-GCC--CGGCAACCGU-UUC-UACUA-------------------------------------------------------UAG----AAA-UU--GGUGCUA-AUUC--CUG-CAAAGCU-----GUUAC------ +CP001034.1/2889251-2889136 U-CCUUAUCAAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-GCC--CGGCAACC-G-GCA-GCAGCUAA------------------------------------------------UCCUGCU----GUA-AA--GGUGCCA-AAUC--CUG-CAGAAGU-----GUAUU------ +CP001056.1/749334-749442 A-UCUUAUCAAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-ACC--CGGCAACC-A-AAU-GAUUACU---------------------------------------------------UAUCA----UUU-AU--GGUGCUA-AAUC--CUG-CAACUU-------AUG------- +ACJM01000005.1/12852-12955 C-UCUUAUCAAGAGAAGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC--CGGCAACCGG-ACA-CGC----------------------------------------------------------------GUC-GC--GGUGCUA-AUUC--CAG-CAGGGAG-----UGAA------- +ABDP01000004.1/161395-161294 C-UCUUAUCAAGAG-AGG-U-GG-----------------AGGGAAAAGGG-CCCUA--UGAA-ACC--CGGCAACC-A-GUG-AUA---------------------------------------------------------UUC----ACU-AA--GGUGCCA-AUUC--CUG-CAG---------UAUU------- +CP000922.1/2445298-2445193 C-UCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--UGUG-CCCGA--UGAA-ACC--CGGCAACC-G-UCA-GCGCU-------------------------------------------------------GCU----GAA-AU--GGUGCCA-AUUC--ACA-CAAAGCG-----UU-U------- +CP001393.1/1215384-1215507 U-UCUUAUCAAGAG-UGG-C-GG-----------------AGGGA--CUGG-CCCAA--UGAA-GCC--CGGCAACC-G-GAA-AAAGGUAGGG--------------------------------------------GUGCCCUUU----UUC-UU--GGUGCCA-AUUC--CAG-CAGGUAU-----UUUUUUA---- +CP000930.2/1734610-1734715 C-UCUUAUCAAGAGUUGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-GCC--CGGCAACCAG-CAG-GUUUU-------------------------------------------------------UCC----UGC-AU--GGUGCCA-AUUC--CUG-CAGGG--------GAA------- +CP000679.1/1731346-1731467 U-UCUUAUCAAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCAA--UGAA-GCC--CGGCAACC-G-GAA-AAAGGUAUGG--------------------------------------------GUGCCCUUU----UUC-UU--GGUGCCA-AUUC--CAG-CAGGUAU-----UUUUAA----- +ABDA02000002.1/27359-27468 C-UCUUAUCUAGAG-AGG-U-GG-----------------AGGGA-CUGUG-CCCUG--UGAA-ACC--CAGCAACC-A-UCA-AUUUUU----------------------------------------------------ACAUU----GAA-AU--GGUGCUA-AUUC--CUG-CAAAGCA------AAU------- +ACLX01000083.1/11419-11532 U-UCUUAUCUAGAG-AGG-U-AG-----------------AGGGA--CUGG-CCCUU--UGAC-GCC-UCAGCAACC-A-UUA-ACAUUCA--------------------------------------------------UUCGUU----AAU-AA--GGUGCUA-AUUC--CAG-CAAAUUG-----UGAA------- +BAAZ01010499.1/873-972 C-UCUUAUCAAGAG-AGG-U-GG-----------------AGGGA-UAGGG-CCCGA--UGAA-ACC--CGGCAACC-U-GUA-UUU----------------------------------------------------------------UCA-A---GGUGCCA-AUUC--CUG-UAGAUAG-----A--U------- +ABKW02000003.1/317079-316978 C-UCUUAUCAAGAG-AGG-U-GG-----------------AGGGAAAAGGG-CCCUA--UGAA-ACC--CGGCAACC-A-GUG-AUA---------------------------------------------------------UUC----ACU-AA--GGUGCCA-AUUC--CUG-CAG---------UGCU------- +CP001348.1/101863-101963 U-CCUUAUCAAGAG-AGG-U-GG-----------------AGGGA-AUGGG-CCCGA--UGAA-ACC--CGGCAACCAG-C-A-UUU---------------------------------------------------------UUU-----GC-AU--GGUGCCA-AUUC--CUG-CAGGC---------UA------- +ABVH01000010.1/37660-37766 C-GCUUAUCAAGAG-CGA-G-GG-----------------AGGGA--CUGG-CCCGA--UGAA-CUC--CGGCAACC-U-GCU-UCAU--------------------------------------------------------UUA----GCA-A---GGUGCCA-AUUC--CAG-CAAAAUG-----GAUUC------ +CP000560.1/1082099-1081978 U-UCUUAUCAAGAG-AAG-C-CG-----------------AGGGA--CUGG-CCCGA--CGAC-GCU-UCAGCAACC-G-GUG-UAGUGGUUUAC------------------------------------------CCAAACCAUG----ACC-AA--GGUGCUA-AAUC--CAG-CAAGCUA-----AAAA------- +CP000721.1/1647224-1647332 A-ACUUAUCAAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCGA--AGAA-ACC--CAGCAACCGG-UAA-AUUUUAU---------------------------------------------------AGAAU----UAC-UU--GGUGCUA-AAUC--CUG-CAGCG--------UAA------- +ACMR01000082.1/17402-17507 U-UCUUAUAAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUU--UGAA-ACC-UCAGCAACC-U-AAU-AU----------------------------------------------------------UAC----AUA-AA--GGUGCUA-AAUC--CUG-UAGGAUC-----UAAA------- +ACLP01000020.1/71764-71658 C-UCUUAUCAAGAG-UGG-U-GG-----------------AGGGA--UGUG-CCCUA--CGAA-ACC--CAGCAACC-G-UCA-UUG---------------------------------------------------------UAU----GAC-AU--GGUGCUA-AUUC--ACA-UAAAGUU-----AAUCA------ +ACLW01000047.1/255928-256033 U-UCUUAUUAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUU--CGAA-GCC-UCAGCAACC-U-UAU-GUG---------------------------------------------------------AUA----UAA-A---GGUGCUA-AAUC--CUG-UAGGAUC-----UAAA------- +ACNG01000055.1/75164-75269 U-UCUUAUUAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUU--CGAA-GCC-UCAGCAACC-U-AAU-GU----------------------------------------------------------GAU----AUA-AA--GGUGCUA-AAUC--CUG-UAGGAUA-----UAAA------- +AP009484.1/63878-63783 U-GCUUAUCCAGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-ACC--CGGCAACC-U-AUU-A------------------------------------------------------------------AUU-UA--GGUGCUA-AUUC--CAG-CAGGU---------AU------- +ABFU01000060.1/128844-128955 C-UCUUAUCGAGAG-CGG-C-GG-----------------AGGGA-AUAGG-CCCUG--UGAA-GCC--CGGCAACC-A-UCA-AGCGAAUU-------------------------------------------------UUGCUU----GAA-AA--GGUGCUA-AUUC--CUA-CAGGUAA-----UC--------- +AAML04000010.1/122381-122487 A-UCUUAUCAAGAG-UGG-C-AG-----------------AGGGA--CUGG-CCCUG--UGAA-GCC--CGGCAACC-A-GUA-UAUUUA----------------------------------------------------AUUAU----ACA-UU--GGUGCUA-AAUC--CUG-CAGCA--------UUU------- +ABFD02000009.1/97533-97428 U-UCUUAUCCAGAG-UGG-U-GA-----------------AGGGA--CUGG-CCCUA--UGAA-ACC--CAGCAACC-A-GUA-UAUUUU----------------------------------------------------UAUAU----ACA-UU--GGUGCUA-AAUC--CUG-CAGUA---------UU------- +AARM02000086.1/6918-7038 C-UCUUAUCGAGAG-CGG-C-AG-----------------AGGGA--CUGG-CCCGA--UGAA-GCC--CGGCAACCUA-ACU-UUAUUUAA------------------------------------------------GCGUAAA----GUG-AA--GGUGCUA-AUUC--CAG-CAAAAAUG---G--UGUAU---- +ABSQ01002824.1/631-738 G-CCUUAUCAAGAG-CGG-U-GG-----------------AGGGA--UAGG-CCCUA--UGAA-ACC--CGGCAACC-A-UAG-UGUGAA-----------------------------------------------------UACA----CGU-UU--GGUGCUA-AAUC--CUA-CAGAAUA-----UU-U------- +ACFR01000002.1/115417-115315 C-UCUUAUCGAGAG-AGG-U-GG-----------------AGGGA--UGUG-CCCUA--UGAA-GCC--CGGCAACC-G-UCU-GAU---------------------------------------------------------AUA----GAA-AU--GGUGCCA-AUUC--ACA-UAAAGUU-----CA--------- +AM295250.1/465274-465380 C-UCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--UGUG-CCCUG--CGAA-ACC--CGGCAACC-G-UCU-UUA-U-------------------------------------------------------AUA----GAA-AU--GGUGCCA-AUUC--ACA-AAAAGUU-----GAAC------- +AARL02000014.1/678-559 C-UCUUAUCGAGAG-CGG-C-AG-----------------AGGGA--CUGG-CCCGA--UGAA-GCC--CGGCAACC-U-AAC-UUUAUGUAA-----------------------------------------------GCGUAAA----GUG-AA--GGUGCUA-AUUC--CAG-CAAAAUG-----GUGUAU----- +ABKL02000024.1/81090-81192 A-UCUUAUCCAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-ACC--CGGCAACC-A-GUA-UAUUU------------------------------------------------------AUAU----ACA-AU--GGUGCUA-AAUC--CUG-CGGCG----------A------- +ACND01000092.1/77021-76920 U-UCUUAUCACGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAU-ACC-UCGGCAGCGGA-U-U-CGUUA-------------------------------------------------------GGA-----AU-AC--UGUGCCA-AUUC--CAG-CAAGG----------U------- +ACMS01000020.1/866-971 C-UCUUAUCCAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUA--CGAU-ACC-UCAGCAACG-G-GUU-UUU-----------------------------------------------------------U----AAU-AC--CGUGCUA-AUUC--CAG-CAAGCUU-----AAAGU------ +ACMM01000043.1/11026-11131 U-ACUUAUCCAGAG-AGG-U-AG-----------------AGGGA--CUGG-CCCUA--UGAC-ACC-UCAGCAGCG-G-GUU-CUGUAG-----------------------------------------------------UAGG----AAC-AC--CGUGCUA-AUUC--CAG-CAAGC---------AA------- +ACLY01000071.1/41239-41095 C-UCUUAUCAAGAGCAGG-U-GG-----------------AGGGA-UUUGG-CCCGA--UGAA-GCC--CAGCAACC-G-ACC-GUAAUACCAUUGUGAAAUGGGG--------------------CGUAUAUUUACGACGCCAAAA----GGC-AC--GGUGCUA-AUUC--CAG-CAGAAAG-----UAUA------- +CP000817.1/560536-560639 C-UCUUAUGAAGAG-CGG-C-GG-----------------AGGGA--AGUG-CCCUA--UGAA-GCC--CGGCAACC-A-UCA-CAU---------------------------------------------------------AGU----GAA-AA--GGUGCCA-AAUC--ACC-CAAAGAU-----U-UU------- +ACMT01000176.1/7164-7023 C-UCUUAUCAAGAGCAGG-U-GG-----------------AGGGA-UUUGG-CCCGA--UGAA-GCC--CAGCAACC-G-ACC-GUAAUACCAUUGUGAAAUGGG-----------------------GCGUUUAUUUACGCCAAAA----GGC-AC--GGUGCUA-AUUC--CAG-CAGAAAG-----UUUA------- +ACNK01000182.1/46147-46039 U-UCUUAUCAAGAG-AGA-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-AUC-UCAGCAACAG--GCU-AUAUC-------------------------------------------------------AAA----GU--AC--UGUGCUA-ACUC--CAG-CGAACGC-----AAUAG------ +CP000148.1/765280-765385 U-UCUUAUCACGAG-CGA-C-CG-----------------AGGGA--CUGG-CCCUA--UGAC-GUC-GCGGCAACC-C-CCC-GC----------------------------------------------------------AAG----GGG-AC--GGUGCCA-AAUC--CUG-CGGAACG-----GCAA------- +ACME01000005.1/38827-38723 A-UUGUAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCUU--UGAA-ACC-UCGGCAACA-G-GUU-CAUU--------------------------------------------------------UUG----AAU-AC--UGUGCCA-CUUC--CUG-CAAGCUU-----U--A------- +ABMW01084009.1/100-6 C-AUUUAUCAAGAG-UGG-C-AG-----------------AGGGU--CAGG-CCCUG--UGAA-GCC--CAGCAACC-U-ACA-UUU----------------------------------------------------------------GUA-A---GGUGCUA-AAUC--CUG-CGGUA------------------ +ABGD02000008.1/40601-40696 A-CCUUAUAAAGAG-CGG-C-GG-----------------AGGGA--CUGG-CCCUG--UGAA-GCC--CGGCAACC-U-GCA-UAU-----------------------------------------------------------U----GCA-A---GGUGCCA-AAUC--CAG-CGGUA------------------ +CP001099.1/664814-664922 C-UAUCAUCCAGAA-AGG-C-GG-----------------AGGGA--CUGG-CCCUG--CGAA-GCC-UUGGCAACC-U-UCA-UAUCAC-----------------------------------------------------CUAU----GAG-A---GGUGCCA-AAUC--CAU-CCCGGAG-----GAAU------- +ACMJ01000013.1/79549-79437 C-CUUUAUCAAGAG-AGG-C-AG-----------------AGGGA--CCGG-CCCUU--UGAA-GCC--CAGCAACC-U-CAG-UUUAUAA---------------------------------------------------GAACC----GAA-UA--GGUGCUA-AUUC--CUG-CAAAAUG-----CAUUG------ +CP001337.1/4323854-4323960 U-GCUCAUCGAGAU-GGG-C-UG-----------------AGGGA--CUGG-CCCGA--UGAC-GCC--CGGCAACC-C-CCA-ACA----------------------------------------------------------------GGG-AA--GGUGCCA-AAUC--CAG-CGGCAAU-----GAAGAA----- +ACGB01000028.1/29135-29031 U-GCUCAUCAAGAG-UGG-C-GG-----------------AGGGA--AUGG-CCCUA--UGAA-CCC-ACAGCAACC-A-UGG-CCUCA-------------------------------------------------------UGG----CCA-AC--GGUGCUA-AAUC--CUG-CAAUG--------UAA------- +ACMZ01000099.1/4914-5019 U-UCUUAUCAAGAGCAGG-U-GG-----------------AGGGA--CGAG-CCCGA--CGAA-ACC--CGGCAACC-G-AUC-UACAAU-----------------------------------------------------CGUA----GAC-AC--GGUGCUA-AUUC--UCG-CAGCA---------UU------- +AASE01000018.1/36798-36683 C-UAUCAUCGAGAA-AGG-U-GG-----------------AGGGA--CUGG-CCCUG--AGAA-ACC-UUGGCAACCGU-CAA-UUCAUAAU-------------------------------------------------GAAGUA----UGA-AC--GGUGCCA-AUUC--CAU-CCCGGUA-----UAAA------- +ACOK01000109.1/19481-19381 A-CCUUAUCAAGAG-CGG-C-GG-----------------AGGAA-ACAGG-UCCUG--UGAA-GCC--CGGCAACC-U-GAC-UAUUU-------------------------------------------------------CGG----UCA-A---GGUGCUA-AUUC--CUG-CGG----------UUU------- +ACJB01000070.1/16733-16623 C-UCUUAUCCUGAG-UGG-U-GG-----------------AGGGACAUGGA-CCCAA--CGAA-ACC--CAGCAACC-U-CUU-UUUAG-------------------------------------------------------UAA----AGA-AA--GGUGCCA-AACCGUUUG-CAGACAU-----AUAU------- +AP008971.1/1262692-1262597 A-UCUUAUUAAGAG-UAG-U-GG-----------------AGGGA-AUGGG-CCCUA--UGAA-ACU--CAGCAACC-U-AUU-AA-----------------------------------------------------------------AUU-A---GGUGCUA-AAUC--CCA-CAGGA----------A------- +ACNI01000057.1/7157-7272 U-ACUUAUCCAGAG-AGG-U-GG-----------------AGGGA--ACGG-CCCUA--AGAA-ACC-UCAGCAACC-C-CUA-UGCAAU----------------------------------------------------UUUAU----AGG-AA--GGUGCUA-AUUC--C-G-CAGAGAA-----CACGAUG---- +CP000975.1/1171211-1171325 C-UCUUAUCGAGAG-CGG-U-GG-----------------AGGGA--CUGG-CCCUG--UGAA-ACC-GCGGCAACC-G-GAA-AAGAGAGU-------------------------------------------------CUUUUC----GUC-AA--GGUGCCA-AUCC--CAG-CCCUUUG-----AAGC------- +ACLA01000020.1/206857-206751 A-CCUCAUCCAGAG-CAG-C-GG-----------------AGGGA--AUGG-CCCGA--UGAA-GCU-GCGGCAACCAU-GGC-AAUGU-------------------------------------------------------GUG----CCA-AC--GGUGCCA-AUUC--CUA-UAGGCGG-------AG------- +ACLT01000057.1/24072-24187 U-ACUUAUCCAGAG-AGG-U-GG-----------------AGGGA--ACGG-CCCUA--AGAA-ACC-UCAGCAACC-C-CUA-UGCAAU----------------------------------------------------UUUAU----AGG-AA--GGUGCUA-AUUC--C-G-CAGAGGA-----CACGAUG---- +CP000860.1/973047-972931 C-UCUUAUCGAGAG-UGG-C-GG-----------------AGGGA--CUGG-CCCGA--UGAA-GCC--CGGCAACCAG-UCG-GUGGCGGU------------------------------------------------GGUCACC----GGC-CA--GGUGCUA-AUUC--CUG-CGGGAGA-----UCGAU------ +ACMD01000102.1/19238-19132 U-UCUUAUCAAGAG-AGA-U-GG-----------------AGGGA--CUGG-CCCGG--UGAA-AUC-UCAGCAACAGG-CUA-AAA-----------------------------------------------------------A----AGC-AC--UGUGCUA-AUUC--CAG-CAAACGU-----AAAAG------ +ACMU01000050.1/34307-34422 U-ACUUAUCCAGAG-AGG-U-AG-----------------AGGGA--ACGG-CCCUU--UGAA-ACC-UCAGCAACC-C-CUA-UGUAAU----------------------------------------------------UACAU----AGG-AA--GGUGCUA-AUUC--C-G-CAGAGGA-----CACUAUG---- +ACEC01000115.1/2240-2146 G-UCUUAUCAAGAG-UGG-U-GG-----------------AGGUA-ACAGG-ACCUG--UGAA-GCC--CGGCAACC-------UUUUG-------------------------------------------------------AGU--------AA--GGUGCCA-AAUC--CUG-CGGCU------------------ +CP001364.1/4661646-4661757 C-ACUCAUCCAGAG-CGG-U-GG-----------------AGGGA--CCGG-CCCGU--UGAA-ACC-GCAGCAACCCU-CGU-AUGCGUCG------------------------------------------------CCGCAUA----CGA-AC--GGUGCUA-AGUC--CGG-CAGAG---------GU------- +CP001145.1/871363-871477 U-UCUUAUCCAGAG-CGG-U-GG-----------------AGGGA--AAGG-CCCGA--AGAA-GCC--CGGCAACC-A-GCG-AGGGAGAA-------------------------------------------------AACCGA----GC--AU--GGUGCCA-ACUC--CUU-CUGCACC-----AAGUC------ +CP000492.1/2010009-2009901 C-UGUCAUCGAGAA-AGG-U-GG-----------------AGGGA--CUGG-CCCUG--AGAA-ACC-UUGGCAACC-G-UCA-UUGCA------------------------------------------------------AUAU----GAU-U---GGUGCCA-AUUC--CAU-CCCGGAU-----UACU------- +AAFX01122557.1/25-152 U-GCUCAUCCAGAG-AGG-U-GG-----------------AGGGA--CCGG-CCCUG--AGAA-ACC-UCGGCAACC-G-CGA-AGCGC-------------------------------------------------------AGU----CGC-U---GGUGCCA-AAUC--CGG-CAGAAGU-----UCUCCGGCAGG +CT573074.1/54619-54740 A-UCUUAUCCGGAG-UGG-C-AG-----------------AGGGA--CUGG-CCCUG--UGAA-GCC-ACAGCAACC-G-GCC-UGUUCAGAUUAC----------------------------------------GUCUGAACAUG----GUG-CA--GGUGCUA-AUUC--CUG-UCUCAAG-----UUU-------- +ABCM01000001.1/92975-92873 U-ACUUAUCCAGAA-AGA-C-UG-----------------AGGGA--AAGG-CCCUG--UGAU-GUC-UUAGCAACC-U-GUU-GAU----------------------------------------------------------UA----AUA-A---GGUGCUA-AUUC--CUG-UCCGCAA-----CG-U------- +AM263198.1/870267-870363 A-UCUUAUCAAGAA-AGG-U-GG-----------------AGGGU-UCUGG-CCCGA--UGAA-GCC-UUGGCAACC-G-GAU-U------------------------------------------------------------------UUC-AC--GGUGCCA-AAUC--CAG-CAGUU----------A------- +ACKT01000016.1/194512-194407 A-CCUCAUCCAGAG-CAG-U-GG-----------------AGGGA--AUGG-CCCGA--UGAA-GCU-GCGGCAACC-A-UGA-CGACU-------------------------------------------------------GGG----UCA-AC--GGUGCCA-AUUC--CUU-UAGGCGG-------AC------- +CP001100.1/1493806-1493922 C-UGUCAUCAAGAA-AGG-U-GG-----------------AGGGA--AAGG-CCCUG--CGAA-ACC-UUGGCAACCGC-UCA-AAUAAA----------------------------------------------------AAUGU----GAG-UU--GGUGCUA-AUUC--CUA-CCCGGUG-----UAAACU----- +CP000239.1/1201745-1201635 U-CUUUAUCCAGAG-CAGAC-UG-----------------AGGGA-UCAGG-CCCAA--CGAA-GCU-GCGGCAACC-G-GCG-GAAGC------------------------------------------------------CUCC----GCU-AC--GGUGCCA-ACUC--CUG-CGGUUAG-----UCAG------- +ACIH01000230.1/3738-3609 A-UCUUAUCAAGAGCAGG-U-GG-----------------AGGGA--CUAG-CCCGA--UGAU-ACC--CGGCAACC-G-GCG-AUGAAAC---------------------------------------------------CCAUC----GCA-GC--GGUGCUA-AUUC--UUG-CAGGACCGU-CC----GUUUCGA +ACIK02000010.1/282585-282485 A-ACUCAUCAAGAG-UAG-U-GG-----------------AGGGA--UAGG-CCCUG--UGAA-GCU-ACAGCAACCAU-UCC-AA----------------------------------------------------------GAG----GAA-AA--GGUGCUA-AUUC--CUA-UGACA----------A------- +CP000607.1/1332223-1332114 C-UAUCAUCGAGAA-AGG-U-GG-----------------AGGGA--CUGG-CCCUG--AGAA-GCC-UUGGCAACCGU-CAU-UCCUG-------------------------------------------------------UAA----UGA-UU--GGUGCCA-AUUC--CAU-CCUGGCA-----GGGA------- +CP001101.1/884104-884209 C-UAUCAUCCAGAA-AGG-U-GG-----------------AGGGA--GUGG-CCCUG--AGAA-GCC-UUGGCAACC-G-UCA-GU----------------------------------------------------------AGU----GAU-U---GGUGCCA-AUUC--CAA-CCCGGAC-----AAGCA------ +CP000108.1/1604667-1604787 C-UAUCAUCCAGAA-AGG-U-GG-----------------AGGGA--CUGG-CCCAA--AGAA-GCC-UUGGCAACC-G-UUA-UUGUACU---------------------------------------------------GCAAU----AAU-A---GGUGCCA-AUUC--CAU-CCUUAAC-----AUGGUAACU-- +ABIB01000001.1/287097-286995 U-CGUUAUCAAGAA-AGG-C-UG-----------------AGGGA-AUAGA-CCCGA--UGAA-GCC-UUAGCAACC-C-UUU-ACAC--------------------------------------------------------AUA----AAG-AA--GGUGCUA-CAUU--CUA-CUGCG----------C------- +AAOG01000001.1/142958-142849 A-UGUUAUCAAGAA-AGG-C-GG-----------------AGGGA-UUAGA-CCCAU--UGAA-GCC-UUAGCAACC-C-UUU-AGUA--------------------------------------------------------AUA----AAG-AA--GGUGCUA-AAUU--CUA-CUCAAUU-----AUUCG------ +AANC01000003.1/237429-237533 A-UGUUAUCAAGAA-AGG-C-GG-----------------AGGGA-AUAGA-CCCUA--UGAA-GCC-UUAGCAACC-C-UUU-CUCC--------------------------------------------------------CGA----AAG-AA--GGUGCUA-CAUU--CUA-UCUGU--------UUU------- +ACBZ01000203.1/8528-8629 C-UCUUAUUCAGAG-UGG-U-GG-----------------AGAUAUUAAGG-AUCAG--UGAA-ACC-ACGGCAACC-C-CUG-AC----------------------------------------------------------AAA----AGG-AA--GGUGCCA-ACCU--GAG-CGAAG----------A------- +CP001108.1/778657-778762 C-UGUCAUCCAGAA-AGG-U-GG-----------------AGGGA--CUGG-CCCUG--AGAA-GCC-UUGGCAACC-G-UCA-UU----------------------------------------------------------CGU----GAU-U---GGUGCCA-AUUC--CAA-CCCGGAG-----AGCU------- +CU207366.1/381646-381752 U-CGUUAUCAAGAA-AGG-U-UG-----------------AGGGA-UUAGA-CCCUG--UGAA-ACC-UUGGCAACC-C-UCC-UGUAA-------------------------------------------------------UGG----GAG-AA--GGUGCUA-CGUU--CUA-CCACGCC-----A--G------- +ACIN02000013.1/199862-199965 C-UCUUAUUCAGAG-UGG-C-GG-----------------AGAGU-GAAGG-CUCUG--UGAA-GCU-ACGGCAACC-C-CUG-AA----------------------------------------------------------AGA----UGG-AA--GGUGCCA-ACCU--GAG-CGAAGU-------UUU------- +AARI02000249.1/265-361 A-ACUUAUCAAGAA-AGG-U-GG-----------------AGGGU-UCUGG-CCCCG--UGAA-CCU--UGGCAACC-G-GAA-GU-----------------------------------------------------------------UUC-AC--GGUGCCA-AAUC--CAG-CAGGU----------A------- +ACHB01000100.1/57340-57454 G-AUUUAUAAAGAA-GUG-G-CG-----------------AGAGA--CUGG-CUCAA--UGAC-CCA-CUGGCAACC-U-UCA-AAAAAC-----------------------------------------------------GUUU----GAA-AA--GGUGCCA-AUUC--CUG-UCCAAAG-----CAAUGU----- +ABIL02000006.1/144101-144004 A-CCUUAUUUAGAG-CGG-U-GG-----------------AGUGA-AUAGG-CACUA--UGAA-ACC--CGGCAACC-G-GCA-AA-----------------------------------------------------------------GGU-AC--GGUGCUA-AUAC--CUA-CGGGA---------UU------- +CP000096.1/692601-692748 C-UAUCAUCGAGAA-AGG-U-GG-----------------AGGGA--CUGG-CCCUG--AGAA-GCC-UUGGCAACC-G-UCA-UUGACCGUCAGUGAUUCAAUGGAUUG-------------CAUUGAUUCAUGUAUUGAGGUAAU----GAU-U---GGUGCCA-AUUC--CAU-CCCGGUU-----GAAG------- +AAPR01000022.1/22928-22828 G-AUUUAUAAAGAA-GAG-G-CG-----------------AGAGA--CAGG-CUCCG--CGAC-CCU--CGGCAACC-U-CAA-CAAAG-------------------------------------------------------UGU----UGA-AA--GGUGCUA-AUUC--CUG-CCC----------GAC------- +ABRU01000018.1/11937-11821 C-ACUCAUCAAGAC-CGG-C-UG-----------------AGGGA-UUAGG-CCCUU--UGAC-GCC-GGGGCAACC-A-UCG-GGUUUCA--------------------------------------------------CCACCC----GAA-AC--GGUGCCA-ACUC--CUG-CGGGGUC-----CUUCG------ +ABVW01000002.1/44661-44766 U-AGUUAUCAAGAA-AGG-U-GG-----------------AGGGA-UUAGA-CCCUG--UGAA-GCC-UUAGCAACC-C-UUU-GUAUUG-----------------------------------------------------UUCA----AAG-AA--GGUGCUA-CAUU--CUA-UCUCA----------U------- +ACDH01000015.1/29225-29312 A-UACCAUCAAGAG-AGA-U-UG-----------------AGGGA--CUGG-CCCGU--UGAA-AUC-UCAGCAACC-U-GCU-UUU---------------------------------------------------------UAA----GUG-U---GGUGCUA-ACUC--CUG------------------------ +AAWS01000061.1/3106-3001 G-AUUUAUAAAGAA-GCG-C-UG-----------------AGAGA-GUAGG-CUCGA--UGAA-GCG-CUGGCAACC-U-GCU-AC----------------------------------------------------------ACA----GUA-A---GGUGCUA-AGUC--CUA-CCUAAUU-----UAUU------- +ABED02000029.1/620487-620585 G-ACUUAUCAAGAG-CGG-C-UG-----------------AGGGG-ACAGG-CCCUG--UGAA-GCC--CGACAACC-U-GCG-CGA-G-------------------------------------------------------AGC----GUA-A---GGUGCCA-AAUC--CUG-CGGGA------------------ +ABOU02000055.1/96522-96420 C-UCUUAUUCAGAG-CAG-U-GG-----------------AGAUACAAAGG-AUCUA--AGAA-GCU-GCGGCAACC-C-CAC-AUUAU-------------------------------------------------------AAA-----GG-AA--GGUGCCA-ACCU--GAG-CGAGU------------------ +ACEX01000437.1/2744-2885 C-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA--ACGG-CCCGU--UGAA-GCC-CCGGCAACC-C-UCC-AGCUGGUCUCGCGUCCUGU---------------------------AGCGAGGCUCCCAGCUC----GGG-AA--GGUGCCA-AUUC--CGU-CUCGUGG-----CGAAAUG---- +AAXX01000001.1/747308-747200 U-UGUUAUCACGAA-AGC-U-GG-----------------AGGGA-AUAGA-CCCUA--UGAA-AGC-UUAGCAACC-U-CUC-GCCCU-------------------------------------------------------UGC----GGA-AA--GGUGCUA-CAUU--CUA-UUCCGAU-----ACUA------- +ABOX02000046.1/18955-19074 A-UCUCAUGAAGAG-UGG-U-UG-----------------AGGGA--CUGG-CCCUA--CGAA-ACC-ACGGCAACC-G-GCU-GGGACGCG------------------------------------------------AUUUCCA----GUG-CA--GGUGCCA-AGUC--CAG-CUCGAGC-----ACCAUU----- +CP001275.1/371734-371625 C-GCUCAUCUCGAG-CGG-U-GG-----------------AGGGA--ACGG-CCCGA--CGAA-ACC--CGGCAACCA--GCG-CAGGCC----------------------------------------------------ACUGC----GC--CA--GGUGCCA-AUGC--CGG-CGGAGCG-----GGAA------- +ABWO01000038.1/8212-8308 C-UCUUAUUCAGAG-UGG-U-GG-----------------AGGUA-AAAGG-AUCUA--UGAA-GCC-ACGGCAACC-C-CGG-GAA----------------------------------------------------------------CGG-AA--GGUGCCA-ACCU--GAG-CGAGU------------------ +ACDD01000058.1/73-160 A-UACCAUCCAGAG-AAG-C-GG-----------------AGGGA--CUGG-CCCGA--UGAU-GCU-UCAGCAACC-U-ACU-GUU---------------------------------------------------------AGA----GUG-U---GGUGCUA-AUUC--CAG------------------------ +AAVO02000010.1/47842-47944 C-UUUUAUUCAGAG-UGG-U-GG-----------------AGAUACAAAGG-AUCUG--AGAA-GCC-ACGGCAACC-C-CUU-UAUGU-------------------------------------------------------AUG----AGG-AA--GGUGCCA-ACCU--GAG-CGAGA------------------ +AAVL02000036.1/100921-100817 C-UCUUAUUAAGAGUUGG-C-GG-----------------AGAUA-CAAGG-AUCUG--UGAU-GCC-ACGGCAACC-C-CCG-AUUAU-------------------------------------------------------GAU----GGA-A---GGUGCCC-ACCG--GAG-CAAUG---------CA------- +ABYX01000149.1/176896-177023 A-GCUCAUCCAGAG-GGA-C-UG-----------------AGGGA--ACGG-CCCGU--UGAA-GUC-CCGGCAACC-C-UCC-UGCCGACCGCGA-----------------------------------------GGUCACGGUG----GGG-AA--GGUGCCA-AUUC--CGU-CUUGCGG-----CGAAAUG---- +CP001472.1/3934139-3934250 A-UUUCAUGAAGAG-UGG-C-UG-----------------AGGGA--CGGG-CCCUG--UGAC-GCC-ACGACAACC-G-GCU-CGAGCAA---------------------------------------------------UUCGG----GAC-AU-CGGUGUCA-ACUC--UCU-CCUGCG------UAAC------- +CT573213.2/7305357-7305472 G-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA--ACGG-CCCAG--UGAA-GCC-CCGGCAACC-A-CCC-GCAUCCG--------------------------------------------------AUGCGU----GGC-A---GGUGCUA-AUUC--CGA-CCCGUGG-----CAGGUU----- +ABVR01000040.1/301449-301548 C-UCUUAUUCAGAG-UGG-U-GG-----------------AGGUACAAAGG-ACCUG--CGAA-GCC-ACGGCAACC-C-CGG-UA----------------------------------------------------------AGC----CGG-AA--GGUGCCA-ACCU--GAG-CGAGC------------------ +CP000386.1/1121068-1121189 C-CCGCAUCAAGAG-CGG-U-GG-----------------AGGGA-ACUGG-CCCAG--CGAA-GCC-GCGGCAACC-G-GCG-GGGGGCCCU-----------------------------------------------UACCCCC----GUG-A---GGUGCCA-AUUC--CAG-CAGGUCU-----CCCCGAG---- +BA000030.3/4858626-4858480 C-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA-UACGG-CCCGA--UGAA-GCC-CCGGCAACC-C-UCC-AGCCGGUCUUGUCACGUUGAU-----------------------GUGGCGAGGCUCCCGGCUC----GGG-AA--GGUGCCA-AAUC--CGU-CUCACGG-----CGAAGUG---- +CP000885.1/4762158-4762063 C-UCUUAUUCAGAG-UGA-C-GG-----------------AGAGU-AAAGA-CUCAG--UGAA-GUC-ACGGCAACC-C-CCU-AU-----------------------------------------------------------------GGG-AA--GGUGCUA-AGUU--GAG-CGAGC------------------ +ACEZ01000126.1/65345-65190 A-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA-AACGG-CCCGA--UGAA-GCC-CCGGCAACC-C-UCC-AGUCGGUACUCGUAGGUCACUGGCG--------------ACCACUUCGCGAGGCUCCCGACUA----GGG-AA--GGUGCCA-AAUC--CGU-CUCACGG-----CGAGAUG---- +CP000159.1/648790-648906 C-AUUCAUCCAGAA-GGG-U-GA-----------------AGGGA-GCAGG-CCCGA--UGAA-GCC-CUGGCAACC-G-CCG-UCGGCACC------------------------------------------------CCCCGAC----GGA-AA--GGUGCCC-CAUC--CUG-CCUCGAC-----UGCU------- +AM420293.1/1589093-1588966 A-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA--ACGG-CCCGU--UGAA-GCC-CCGGCAACC-A-UCU-CGGCGUAUCGCGCAUUC------------------------------CGCGAGGCCGCCGGCG----AAA-AA--GGUGCCA-AUUC--CGA-CCCGU----------C------- +ACIP02000004.1/237213-237114 C-UCUUAUUCAGAG-UGG-U-GG-----------------AGAUACAUAGG-AUCCG--UGAA-GCC-ACGGCAACC-C-CCA-AAG-----------------------------------------------------------C----GGU-A---GGUGCCA-ACCU--GAG-CGAGU----------A------- +AAXA02000011.1/106110-106208 C-UCUUAUUCAGAG-CAG-U-GG-----------------AGGUACAAAGG-ACCUG--UGAA-GCU-GCGGCAACC-C-CCG-GUU-----------------------------------------------------------C----GGG-AA--GGUGCCG-ACCU--GAG-CGAGU------------------ +CP000383.1/165474-165365 G-AUUUAUAAAGAA-GAG-G-GG-----------------AGAGA-ACGGG-CUCUU--UGAA-CCU-CUAGCAACC-U-CCG-GGAGCA----------------------------------------------------AAUCC----AGA-AA--GGUGCUA-AUUC--CUGACCUGA--------AUA------- +AARG01000011.1/103271-103357 U-AACCAUCGAGAG-AAA-C-UG-----------------AGGGA--CUGG-CCCUA--UGAA-GUU-UCAGCAACCUG-UCA-UCA----------------------------------------------------------------GAU-GU--GGUGCUA-AUUC--CAG------------------------ +ACET01000016.1/116829-116743 A-UACCAUCAAGAG-AGA-U-UG-----------------AGGGA--CAGG-CCCGA--AGAU-AUC-UCAGCAACC-U-ACU-GA----------------------------------------------------------AAU----GUG-U---GGUGCUA-ACUC--CUG------------------------ +ACII01000156.1/15700-15599 C-UUUUAUUCAGAG-UGG-U-GG-----------------AGAUACAAAGG-AUCUG--CGAA-GCC-ACGGCAACC-C-CUG-UUUG--------------------------------------------------------UGU----AGG-AA--GGUGCCA-ACCU--GAG-CGAGU------------------ +ACEW01000347.1/17844-17982 C-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA-CACGG-CCCGU--UGAA-GCC-CCGGCAACC-C-UCC-AGUCGGUUCUCGCCAGC-------------------------------GCGAGGCCCCGGCUA----GGG-AA--GGUGCCA-AUUC--CGU-CUCAUGG-----CGAAGUG---- +AAVP02000024.1/12932-13029 C-UCUUAUUCAGAG-CAG-U-GG-----------------AGAUACAAAGG-AUCUG--AGAA-GCU-GCGGCAACC-C-CUG-AAC----------------------------------------------------------------AGG-AA--GGUGCCA-ACCU--GAG-CGAGU------------------ +ABJH01000081.1/1215-1362 C-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA-AACGG-CCCGU--UGAA-GCC-CCGGCAACC-C-UCC-AGCCGGUCUCGUCGCGCACAG----------------------CGCAGCGGGGCUCCCGGCUC----GGG-AA--GGUGCCA-AUUC--CGU-CUCAUGG-----CGAAACG---- +ACEV01000067.1/336881-337014 C-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA--ACGG-CCCGA--CGAA-GCC-CCGGCAACC-G-GCG-UGCAGCCUGUCAUCCCGCG--------------------------AUCGCGGGGUAGCUGACG----ACC-AC--GGUGCCA-AUUC--CGG-CCCGC--------UUC------- +ABWN01000022.1/104834-104735 U-GCUUAUUCAGAG-UGA-U-GG-----------------AGAUACAUAGG-AUCUG--UGAA-GUC-ACGGCAACC-C-CCU-UGG----------------------------------------------------------------CGG-AA--GGUGCCA-ACCU--GAG-CGAAA----------G------- +AANA01000001.1/1389418-1389294 A-CGUUAUCACGAA-AGG-C-AG-----------------AGGGA-UUAGA-CCCAG--UGAA-GCU-UUGGCAACC-U-CUC-AGAA--------------------------------------------------------AUG----AGA-AA--GGUGCUA-CAUU--CUA-CAAUCUA-----UUUCGAUAUUU +AAPD01000001.1/936074-936181 A-AAUUAUCAAGAA-AGG-A-CG-----------------AGGGA-ACAGA-CCCAU--CGAC-UCC-UUAGCAACC-C-UUA-ACGCU------------------------------------------------------CGUU----AAG-AA--GGUGCUA-CAUU--CUG-CCCAU--------UUA------- +ABVK02000003.1/176687-176823 C-UCUUAUCCAGAG-CGG-U-GG-----------------AGGGU--ACGG-CCCUG--UGAA-ACC-GCGGCAACC-U-CCC-GCUCCUUCCGUUCCAU--------------------------------GGCCGGAAGCGGGCG----GGG-CU--GGUGCCA-ACGC--CGG-CCCGGGCGGGGG----AA----- +CP000249.1/5255171-5255287 G-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA--ACGG-CCCAG--CGAA-GCC-CCGGCAACC-A-CCC-GCAUCCC--------------------------------------------------GUGCGC----GGC-A---GGUGCUA-AUUC--CGG-CCUGGUG-----GCAGAC----- +AAYG02000021.1/57727-57823 C-UCUUAUUCAGAG-CAG-U-GG-----------------AGGUACAAAGG-ACCUG--UGAA-GCU-GCGGCAACC-C-CGU-CA-----------------------------------------------------------------AGG-AA--GGUGCCG-ACCU--GAG-CGAGC------------------ +ABJF01000395.1/4781-4624 C-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA-CACGG-CCCGU--UGAA-GCC-CCGGCAACC-C-UCC-AGUCGGUUCUCGCGAUCGCCCGCACG------------GCGACACCAGCGAGGUCCCCGGCUA----GGG-AA--GGUGCCA-AUUC--CGU-CUCAUGG-----CGAAGUG---- +CP000820.1/215210-215091 G-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA--ACGG-CCCAG--CGAA-GCC-CCGGCAACC-A-CCG-UCGCAUCC-------------------------------------------------AUGCGC----GGC-A---GGUGCUA-AUUC--CGA-CCCGGGA-----CGCAGCC---- +ABLU01106369.1/97-6 C-AGUUAUUAAGAA-AGG-C-AG-----------------AGGGA-UUAGA-CCCGU--UGAA-GCC-UUAGCAACC-C-UUU-AUUC--------------------------------------------------------AUA----AAG-AA--GGUGCUA-CAUU--CU------------------------- +ACEU01000265.1/7365-7210 C-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA-UACGG-CCCGU--UGAA-GCC-CCGGCAACC-C-UCC-AGCCAGUCUCCGCGCGGUUCACCGA--------------UACCGCCACCGAAGGCCCUGGCUC----GGG-AA--GGUGCCA-AUUC--CGU-CUCGCGG-----CGAGAUG---- +CP000112.1/2490976-2491083 A-ACUCAUGAAGAG-GAC-G-AG-----------------AGGGG-UCUGG-CCCGA--UGAC-CGU-CCGGCAACC-U-GCC-CGC---------------------------------------------------------AAG----GCA-A---GGUGCCA-AAGC--CAG-CCACGGU-----GAGAU------ +ABYC01000290.1/27042-27199 C-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA-CACGG-CCCGU--UGAA-GCC-CCGGCAACC-C-UCC-GGUCGGUACUCCCGGCGCGUGUUCCA------------CCCGCGUCCGCGAGGCUCCCGGCUC----GGG-AA--GGUGCCA-AUUC--CGU-CUCGCGG-----CGAGAUG---- +ACES01000173.1/1604-1473 A-CCUCAUCCAGAG-GGG-C-AG-----------------AGGGA-UACGG-CCCGA--CGAA-GCC-CCGGCAACC-A-CCC-GCACGUUCGAUG----------------------------------------ACGAGCGGCGC----GGA-CA--GGUGCCA-AUUC--CGU-CCCCGCC-----GCAGGGUG--- +AP008226.1/728125-727989 C-UCUUAUCCAGAG-CGG-U-GG-----------------AGGGU--ACGG-CCCUG--UGAA-GCC-GCGGCAACC-U-CCC-GCCCCUUCCGUUCCAU--------------------------------GGCCGGAUGCGGGCG----GGG-CU--GGUGCCA-ACGC--CGG-CCCGGGCGGGGG----AA----- +AP008957.1/5227167-5227072 C-CACCAUCCAGAG-UGG-C-UG-----------------AGAGA-CCUGG-CUCGA--UGAU-GCC-GCAGCAACC-C-GCU-UCGUUU----------------------------------------------------GCGCA----GUG-UG--GGUGCUA-CCGC--CAG------------------------ +ABXP01000190.1/1560-1672 G-UUUUGUACAGUUUGGG-U-AAC---------------CAGGGA-AAGAG-CCCGA--UGAA-ACC--CGGCAACCUG-UCC--UUUU-------------------------------------------------------AAG----GAU-AA--GGUGCCA-AUUC--UCU-CAGAAGA-----UUUUU------ +ABYA01000312.1/4381-4534 A-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA-CACGG-CCCGA--UGAA-GCC-CCGGCAACC-C-UCC-AGCCGGUUCUCGUGUCGAUCGUUGUGCGCGCACAGCCGAUCGCACCCGCGAGGCUCCCGGCUA----GGG-AA--GGUGCCA-AAUC--CGU-C------------UCA------- +CP001638.1/2955292-2955189 U-UCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCAA--UGAA-GCC--CGGCAACC-G-GUU-GUU----------------------------------------------------------UC----AAC-AU--GAUGCUA-AUUC--CAG-CAGAGCG-----AAUU------- +CP002040.1/5022556-5022415 U-GCUCAUCCAGAG-GGG-U-GG-----------------AGGGA--CCGG-CCCUG--CGAA-GCC-CCGGCAACCAU-UCC-AGCAUGUGACACCCGCGA-----------------------------ACCCGCGGGACGGCUG----GGA-CA--GGUGCCA-ACUC--CGG-CCUGGGG-----ACAAGGU---- +CP001700.1/9422701-9422569 C-GCUCAUCCAGAG-GAG-C-UG-----------------AGGGA--CCGG-CCCUA--CGAC-GCU-CCGGCAACC-A-UCC-GUUCUGCCACCU----------------------------------------CAUCGUGGCAC----GGC-GC--GGUGCCA-ACUC--CGG-CCCACCC-----GGCAGCCGC-- +ADJS01002320.1/1580-1477 U-ACUCAUCGAGAG-CAG-C-GG-----------------AGGGA-UUUGG-CCCCA--UGAU-GCU-GCAGCAACC-A-UUC-UAUAU-------------------------------------------------------AGG----GAA-AA--GGUGCUA-AUUC--CAU-CAGCA----------U------- +CP001825.1/900813-900915 G-CCUUAUCAAGAG-AGG-U-GG-----------------AGGGA-GACGG-CCCUG--UGAA-GCC--CGGCAACC-A-GCG-CCCAG------------------------------------------------------GAGC----GCC-A---GGUGCCA-AUUC--CGG-CGAGG----------U------- +ACIE02000025.1/96603-96517 A-AUCCAUAGAGAG-AGA-U-GG-----------------AGGGA--CAGG-CCCUU--UGAU-AUC-UCAGCAACC-U-GCU-UUU----------------------------------------------------------AA----GUG-U---GGUGCUA-AUUC--CUG------------------------ +CP003056.1/960835-960734 G-CCUUAUCAAGAG-AGG-C-GG-----------------AGGGA-CUUGG-CCCGA--UGAA-ACC-UCAGCAACCAG-CCC-AUAC---------------------------------------------------------------GGC-AC--GGUGCUA-AAUC--CAA-CAGGU----------A------- +CP002637.1/1789046-1788942 C-ACUCAUCAAGAG-CAG-U-GG-----------------AGGGA--CUGG-CCCUA--UGAA-ACU-GCGGCAACC-G-UUG-GCGUA------------------------------------------------------GGCC----AAA-AA--GGUGCCA-AUUC--CUA-UAGGU---------AU------- +ABJG02000470.1/2764-2919 C-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA-AACGG-CCCGU--UGAA-GCC-CCGGCAACC-C-UCC-AGCCAGUCUCCGCGCGGUUCACCGA--------------UACCGCCACCGAAGGCCCUGGCUC----GGG-AA--GGUGCCA-AUUC--CGU-CUCGCGG-----UGAGAUG---- +CP003029.1/2215558-2215432 A-GCUCAUCCAGAA-GGG-U-GG-----------------AGGGA-CCAGG-CCCUG--UGAA-GCC-CUGGCAACC-G-CCC-CGUUGAUCGUCGG--------------------------------------GAGACGACGUGG----GGA-AA--GGUGCCA-AUUC--CUG-CCUCGCA-----CGAC------- +CP001814.1/9846218-9846077 U-GCUCAUCCAGAG-GGG-U-GG-----------------AGGGA--CCGG-CCCUG--CGAA-GCC-CCGGCAACCCU-CCC-GGUUCAAGACUCGUUUUU-----------------------------CUGACGAGGUCGGCCG----GGA-CA--GGUGCCA-AUUC--CGG-UCUGUGA-----CCAGGGU---- +CP002157.1/228642-228537 C-CGUUAUCAAGAA-AGG-C-GG-----------------AGGGA-CUAGA-CCCAA--UGAA-ACC-UUGGCAACC-C-UUU-ACU---------------------------------------------------------UUA----AAG-UA--GGUGCUACAUUC--UAU-UACGCC-------UAU------- +ACCR02000003.1/83189-83082 C-UCUUAUCUAGAG-CGG-C-AG-----------------AGGGA--CUGG-CCCUA--UGAA-GCC--CGGCAACC-U-AAC-UUUUU-------------------------------------------------------UUA----GUG-AA--GGUGCUA-AUUC--CAG-CAACAUU-----UCUA------- +ACDB02000007.1/188296-188209 U-AACCAUCAAGAG-AAA-C-UG-----------------AGGGA--CUGG-CCCUA--GGAC-GUU-UCAGCAACC-U-GCU-UAA---------------------------------------------------------AAA----GUG-U---GGUGCUA-AUUC--CAG------------------------ +CP001681.1/4562963-4563072 U-GCUUAUAGAGAA-AGA-U-GG-----------------AGGGA-UUAGA-CCCUG--CGAA-GUC-UUGGCAACC-U-GUG-CUU----------------------------------------------------------------ACA-A---GGUGCUA-CAUU--CUA-CAGGAAA-----UGCAGCU---- +CP001699.1/4958750-4958860 U-UCUUAUCAAGAA-AGG-C-AG-----------------AGGGA-AAUGG-CCCUG--UGAA-GCC-UUAGCAACCAU-CCG-GAACCAC--------------------------------------------------CAAACC----GGA-AA--GGUGCUA-CAUC--CAG-CCCGC---------AU------- +CP001968.1/2913390-2913281 A-ACUUAUCGAGAG-UAG-U-GG-----------------AGGGA-CAAGG-CCCUG--UGAA-GCU-ACAGCAGCC-G-GUU-AGCAUUAAA-----------------------------------------------AGCUGAU----GUC-U---GGUGCUA-AUUC--CGA-CC----C-----UAUG------- +ABTR02000001.1/1201751-1201854 C-UCUUAUCGAGAG-AGG-C-GG-----------------AGGGA--CUGG-CCCGA--UGAA-GCC--CGGCAACC-U-GCC-CGUA--------------------------------------------------------AGG----GCAUGA--GGUGCCA-ACAC--CAG-CGACC--------GAC------- +ABJJ02000300.1/30118-29960 C-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA-UACGG-CCCGA--UGAA-GCC-CCGGCAACC-C-UCC-AGUCGGUUCUCGUAGCGAUCGCUGACG-----------AUCGUCUCCGCGAGGCUCCCGACUC----GGG-AA--GGUGCCA-AAUC--CGU-CUCACGG-----CGAGAUG---- +ABWK02000020.1/271385-271488 C-UCACAUCCAGAG-CGG-C-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC-GCGGCAACC-A-UUG-ACUUC-------------------------------------------------------GUC----AAA-AC--GGUGCCA-AUUC--CUU-UAGGU---------CC------- +CP001649.1/963759-963659 U-ACUCAUGUAGAG-GAU-G-CG-----------------AGGGAAAUCGG-CCCGU--CGAC-CAU-CCGGCAACC-U-GCU-UCA---------------------------------------------------------GCA----GCA-A---GGUGCCA-AUGC--CUU-CCCGU------------------ +CP001720.1/3787367-3787476 C-UCUUAUCCGGAG-UGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC--CGGCAACC-U-UCU-GAGAACU---------------------------------------------------AAUCA----GAA-A---GGUGCUA-AUUC--CUG-CAGAGGA-----UUUU------- +CP001685.1/832315-832217 A-ACUUAUCAAGAG-UGA-UACU-----------------AGGGA--CCGG-CCCGUUUUGAGUAUC--CAGCAACC-U-GUA-UUA----------------------------------------------------------------ACA-A---GGUGCUA-AUUC--C-G-GCAUG----------U------- +CP001818.1/1579334-1579230 C-UCUUAUCAAGAG-UGG-C-GG-----------------AGGGA--CUGG-CCCGA--UGAA-GCC--CGGCAACC-U-GCA-GAGCACG---------------------------------------------------UCUCU----GCG-U---GGUGCCA-ACAC--CUG-CGGCG----------A------- +CP003056.1/3328132-3328032 U-UCUUAUCCAGAG-AGG-U-GG-----------------AGGGA--AAGG-CCCUU--UGAA-GCC-UCGGCAACA-G-GUU-GAAA---------------------------------------------------------------AAC-AC--UGUGCCA-AUUC--CUG-CAGAC--------AAU------- +CP001778.1/452900-453004 A-CUUCAUCAAGAG-CGG-U-CG-----------------AGGGA--ACGG-CCCUG--CGAC-ACC-GCGGCAACC-A-CCC-AUC-----------------------------------------------------------C----GGG-CA--GGUGCCA-AAUC--CGU-CCGGCGU-----GACC------- +CP001743.1/842385-842265 G-CCUUAUCCAGAG-CAG-C-GGACAGGGCAACUGCCCGACGGGA--ACGG-CCCGA--UGAA-GCU-GCGGCAACCU--GCC-AAA-----------------------------------------------------------G----GC--AA--GGUGCCA-AUUC--CGG-CCCGGCC-----UCUG------- +CP001794.1/1767716-1767554 U----UAUCAAGAGUUGG-C-UG-----------------AGGGA-AUUGG-CCCAA--UGAA-GCC--CAGCAACC-G-ACC-GUAAUGCUAUCGUGAGAUAGGGCGCACGCCAAGGGCGGCGCCGGAAGCGUCAUGCUUCCGCAG----GGC-AC--GGUGCUA-AGUC--CAA-CAGAAAG-----ACCGAU----- +CP001793.1/5775580-5775452 A-UCUUAUCAAGAGCAGG-U-GG-----------------AGGGA--CUAG-CCCUA--UGAA-ACC--CGGCAACCG--GCG-GCAAC-------------------------------------------------------AUC----GC--AC--GGUGCUA-AUUC--UUG-CAGGAGA-----UACGACGAUUG +CP001736.1/1289540-1289681 U-GCUCAUCCAGAG-GGA-C-UG-----------------AGGGA-UACGG-CCCGU--UGAA-GUC-CCGGCAACCCU-CCC-CGUGGAGGCCCCGUCCU-------------------------------GGGGCCGCUCGCGGC----GGA-AC--GGUGCCA-AAUC--CGU-CCCACGC-----CGAGAUCC--- +ACDG02000015.1/15379-15466 A-UACCAUCAAGAG-AGA-U-UG-----------------AGGGA--CAGG-CCCUA--AGAU-AUC-UCAGCAACC-U-ACU-GGA---------------------------------------------------------AAA----GUG-U---GGUGCUA-ACUC--CUG------------------------ +AAXU02000001.1/3185191-3185093 A-GCUUAUCGAGAA-AGA-C-UG-----------------AGGGA--AGGG-CCCGA--CGAC-GUC-UUAGCAACC-U-GUA--------------------------------------------------------------------ACC-AA--GGUGCUA-AUUC--CCA-UCCCGAA-----UA-U------- +CP001631.1/1935400-1935293 G-AAUCAUCGAGAG-CGG-U-GU-----------------AGGGA--CGGG-CCCUG--UGAU-ACC-GCGGCAACCAG-U-U-CGAUAC----------------------------------------------------GUCGA-----AC-CA--GGUGCCA-AU------G-CCCGAGC-----GAUGG------ +CP001738.1/890419-890560 C-GCUCAUCCAGAG-GGG-U-GG-----------------AGGGA--CCGG-CCCUG--UGAA-GCC-CCGGCAACC-C-UCC-CGGUGCUGACGCUCUCGCG--------------------------ACCUGCGAGGCCGGCCGG----GAC-AG--GGUGCCA-AUUC--CGG-CCCGCGA-----CCAAGG----- +ABJI02000433.1/3689-3816 C-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA--ACGG-CCCGU--UGAA-GCC-CCGGCAACC-C-UCC-CGCCGACCGCGA-----------------------------------------GGUCACGGUG----GGG-AA--GGUGCCA-AUUC--CGU-CUCGUGG-----CGAAGUG---- +ABYU02000037.1/4945-4847 C-UCUUAUUCAGAG-UGA-U-GG-----------------AGAUACAUAGG-AUCUG--UGAA-GUC-ACGGCAACC-C-CGC-AUG-----------------------------------------------------------G----CGG-AA--GGUGCCA-ACCU--GAG-CGA-----------AU------- +ACDZ02000006.1/93274-93376 U-ACUUAUCAAGAG-UGA-G-UG-----------------AGGGA-UAAGG-CCCGG--UGAA-CUC--CAGCAACC-U-AAU-CAA-U-------------------------------------------------------UGA----UUA-A---GGUGCUU-UCCU--UAG-CAAAG--------UUU------- +CP003056.1/1844232-1844126 A-ACUUAUCAAGAG-AGG-G-GG-----------------AGGGA--CUGG-CCCGA--GGAA-ACC-UCAGCAACAGA-UUC-UUUUU-------------------------------------------------------GGG----AAU-AC--UGUGCUA-AUUC--CAG-CAAGCGU-----CAAG------- +ACBY02000020.1/258141-258043 A-ACUUAUCAAGAG-UGG-C-AG-----------------AGGGG-ACAGG-CCCUG--UGAA-GCC--CGACAACC-U-ACA-CAAA--------------------------------------------------------UGU----GCA-A---GGUGCCA-AUUC--CUG-CGGGG------------------ +CP001656.1/5519557-5519455 U-UCUUAUCAAGAGCAGG-C-GG-----------------AGGGA--CUAG-CCCGA--UGAA-GCC--CGGCAACC-G-GCG-UAA----------------------------------------------------------------G-C-AC--GGUGCUA-AUUC--UUG-CGGAAAC-----AUUA------- +CP001791.1/1324400-1324509 U-UCUUAUCCAGAG-CGG-C-GG-----------------AGGGA--CUGG-CCCUA--UGAA-GCC--CGGCAACC-A-UCA-CGAAA-------------------------------------------------------GUG----GAA-----GGUGCCA-AUUC--CAA-CAGAGCG-----UAUUCG----- +ACJX02000007.1/318260-318153 C-UCUUAUCCAGAG-CGG-C-GG-----------------AGGGA--CUGG-CCCUG--CGAA-GCC--CGGCAACCU--GCU-UACCCUU--------------------------------------------------UGGGGA----GC--GU--GGUGCCA-AAAC--CUG-CAACC--------GAA------- +CP001739.1/1846920-1847007 A-UAUCAUCAAGAG-GAA-C-UG-----------------AGAGA--CAGG-CUCUG--UGAC-GUU-CCAGCAACC-U-ACG-UAA---------------------------------------------------------AUC----GUG-U---GGUGCUA-AUUC--CUG------------------------ +CP001619.1/3294664-3294557 G-AUUUAUAAAGAA-GAG-G-CG-----------------AGAGA-AUGGG-CUCAA--CGAA-CCU-CUGGCAACCUG-CUA-CCACA------------------------------------------------------UCGG----AGA-AA--GGUGCUA-AUUC--CCA-CCUAA--------GUU------- +CP001867.1/829496-829625 C-ACUCAUCCAGAG-GGG-C-AG-----------------AGGGA-CACGG-CCCGA--CGAA-GCC-CCGGCAACCGC-CGC-ACCGCGCGU----------------------------------------------CAGCGCAG----CGG-AA--GGUGCCA-AUUC--CGU-CCCGCGC-----GGCUCGACG-- +ACLF03000006.1/44662-44769 C-ACUCAUCACGAG-GGG-U-GG-----------------AGGGA--ACGG-CCCGC--UGAU-ACC-CCAGCAACC-A-GUC-GGUCU-------------------------------------------------------UCG----ACC-A---GGUGCUA-CGUC--CGU-CCCGGAG-----UCCG------- +CP003056.1/732327-732208 U-UCUUAUCAAGAG-AGG-U-UG-----------------AGGGA--AUGG-CCCGA--UGAA-GCC-UCAGCAACC-U-UCA-AUGCUUUU------------------------------------------------ACGCAUU----GAA-AA--GGUGCUA-AGUC--CUG-CAAGUUAUGGGAUCAU------- +CP001823.1/1231295-1231405 C-UCUUAUCCAGAG-UGG-U-GG-----------------AGGGA--ACGG-CCCGA--CGAA-GCC--CGGCAACC-G-ACG-GAUCGCA--------------------------------------------------CGGUCC----G-C-GC--GGUGCCA-AUUC--CGG-CAGCGGC-----GUUG------- +CP001769.1/5132553-5132446 U-ACUUAUCCAGAA-AGA-C-GG-----------------AGGGA-CCGGA-CCCGA--UGAU-GUC-UUGGCAACC-A-ACC-AGCCC-------------------------------------------------------AGG----GGA-AU--GGUGCCA-AUUU--CCU-CCCGCCA-----GC-C------- +ACCL02000003.1/136176-136276 C-UCUUAUUCAGAG-UGG-U-GG-----------------AGAUACAGAGG-GUCUG--UGAA-GCC-ACGGCAACC-C-CGC-AU----------------------------------------------------------AGA----CGG-AA--GGUGCCA-GCCU--GAG-CGA----------UUA------- +ACKQ02000002.1/742513-742620 A-UGUUAUCAAGAA-AGG-U-UG-----------------AGGGA-UUAGA-CCCUG--UGAA-ACC-UUAGCAACC-C-UUU-GCGCA------------------------------------------------------AGUA----AAG-AA--GGUGCUA-CGUU--CUA-CCAAAA-------UAA------- +ACIQ02000024.1/9596-9700 A-UCUUAUUCAGAGACGG-U-GG-----------------AGCUACAUAGG-AGCGA--AGAA-GCC-GCAGCAACC-C-CGG-AAA----------------------------------------------------------------CGG-AA--GGUGCUA-ACCU--GAG-CGAACAA------UUU------- +ACHA02000006.1/124772-124667 C-GCUUAUAGAGAA-AGG-C-AG-----------------AGGGA-CUAGA-CCCAA--UGAA-GCC-UUGGCAACCU--GUC-UUG---------------------------------------------------------GAG----AC--AA--GGUGCUA-CAUU--CUA-CCCCACC-----UAAA------- +CP001630.1/1349393-1349277 C-GCUCAUCCAGAG-GGG-C-AG-----------------AGGGA--UCGG-CCCGA--AGAA-GCC-CCGGCAACC-U-GUC-ACCAGUCAUCA-------------------------------------------GACUGGGUG----AUC-AC--GGUGCCA-AUUC--CGA-CCCGC--------GAA------- +CP001661.1/2331226-2331122 A-ACUUAUCACGAG-CGA-C-CG-----------------AGGGA--CUGG-CCCCA--UGAC-GUC-GCGGCAACC-U-CCC-GUA-----------------------------------------------------------A----GGG-AA--GGUGCCA-AAUC--CAG-CGAAGCG-----GCGA------- +CP002043.1/113014-112896 G-UCUUAUCCAGAG-CAG-C-GG-----------------AGGGA--ACGG-CCCUG--UGAA-GCU-GCGGCAACC-U-GCG-GAGGCCUUCU--------------------------------------------AAAGCGCCU----ACU-AA--GGUGCCA-AUUC--CGA-CCCGGUG-----GCCA------- +URS000080DF35_32630/1-94 G-GCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC--CGGCAACC----------------------------------------------------------------------AGAA----AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA------- +#=GR URS000080DF35_32630/1-94 2GIS_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((......................................................................(........)..)).)))....(}..}}}.(((((.................. +URS000080E1B3_911092/1-94 G-GCUUAUCAAGAG-AGG-U-UU-----------------AGGGA--CUGG-CCCGA--CGAA-ACC--CGGCAACC----------------------------------------------------------------------AGAA----AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA------- +#=GR URS000080E1B3_911092/1-94 2YDH_A_SS (.(((((((....(..((.(.....................(((....{{{.))).........)))..)(((..((......................................................................(........)..)).)))....(}..}}..(((((.................. +URS0000BC4670_911092/1-95 G-GCUUAUCAAGAG-AGG-U-GA-----------------AGGGA--CUGG-CCCGA--CGAA-ACC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA------- +#=GR URS0000BC4670_911092/1-95 2YGH_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((.................. +URS000080E047_32630/1-94 G-GCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCGA--CGAA-ACC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA------- +#=GR URS000080E047_32630/1-94 3GX2_A_SS (.(((((((.......((.(.....................(((...{{{{.))).........)))...(((..((.(.............................................................................)..)).)))....(}..}}}.(((((.................. +#=GR URS000080E047_32630/1-94 3GX3_A_SS (.(((((((....(..((.(.....................(((.....{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}...(((((.................. +#=GR URS000080E047_32630/1-94 3GX5_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((.................. +#=GR URS000080E047_32630/1-94 3GX6_A_SS (.(((((((.......((.(.....................(((...{{{{.))).........)))...(((..((.(.............................................................................)..)).)))....(}..}}}.(((((.................. +URS000080E094_32630/1-94 G-GCUUCGCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCGA--CGAA-ACC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA------- +#=GR URS000080E094_32630/1-94 3GX7_A_SS (.(((((((.......((.(.....................(((...{{{{.))).........)))...(((..((.(.............................................................................)..)).)))....(}..}}}.(((((.................. +URS000080E279_32630/1-94 G-GCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC--CGGCAGCC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA------- +#=GR URS000080E279_32630/1-94 3IQN_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.((.((.................. +URS000080DF1C_32630/1-94 G-GCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA------- +#=GR URS000080DF1C_32630/1-94 3IQP_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((.(((.(.............................................................................)..))))))....(}..}}}.(((((.................. +#=GR URS000080DF1C_32630/1-94 3IQR_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((.................. +URS000080E09F_911092/1-126 G-GCUUAUCAAGAG-AGG-U-GG-----------------AGGGA--CUGG-CCCGA--UGAA-ACC--CGGCAACC-A-CUA-GUCUAGCGUCAGCUUC--------------------------------GGCUGACGCUAGGCU----AGU-----GGUGCCA-AUUC--CUG-CAGCG--------GAA------- +#=GR URS000080E09F_911092/1-126 3V7E_C_SS (.(((((((....(..((.(.....................(((.....{{.))).........)))..)(((..((.(.((..(((((((((((((....................................))))))))))))).....))).....)).)))....(}..}...(((((.................. +URS000080DF6B_911092/1-94 G-GCUUAUCAAGAG-AGG-G-CA-----------------AGAGA--CUGG-CUUGA--UGAC-CCC--CGGCAACC-A-----------------------------------------------------------------AAA--------AU--GGUGCCA-AUUC--CUG-CAGAG--------GAA------- +#=GR URS000080DF6B_911092/1-94 4AOB_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((.................. +URS000080DFE5_911092/1-94 G-GCUUAUCAAGAG-AGG-G-GG-----------------AGCGA--CUGG-CGCGA--AGAA-CCC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA------- +#=GR URS000080DFE5_911092/1-94 4B5R_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((.................. +URS000080DDBE_1423/1-119 GUUCUUAUCAAGAG-AAG-C-AG-----------------AGGGA--CUGG-CCCGA--CGAA-GCU-UCAGCAACC-G-GUG-UAAUGGCGA----------------------------------------------AAGCCAUG----ACC-AA--GGUGCUA-AAUC--CAG-CAAGCUC-----GAAC------- +#=GR URS000080DDBE_1423/1-119 4KQY_A_SS .((((((((....(.(.(.(.....................(((...{{{{.))).........))..))(((..((.(.((....(((((..................................................))))).....))).....)).)))....(}..}}}.(((((.................. +URS0000A7634F_911092/1-94 G-GCUUAUCAAGAG-AGG-G-GG-----------------AGUGA--CUGG-CGCGA--AGAA-CCC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA------- +#=GR URS0000A7634F_911092/1-94 5FJC_A_SS ..(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((.................. +URS0000A76377_911092/1-94 G-GCUUAUCAAGAG-AGG-G-GG-----------------AGCGA--CUGG-CGCGA--AGAU-CCC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA------- +#=GR URS0000A76377_911092/1-94 5FK1_A_SS (.(((((((.......((.(.....................(((...{{{{.))).........)))...(((..((.(.............................................................................)..)).)))....(}..}}}.(((((.................. +URS0000A76363_911092/1-94 G-GCUUAUCAAGAG-AGG-G-GG-----------------AGCGA--CUGG-CGCGA--AGAG-CCC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA------- +#=GR URS0000A76363_911092/1-94 5FK2_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((.................. +URS0000A76386_911092/1-94 G-GCUUAUCAAGAG-AGG-G-CG-----------------AGCGA--CUGG-CGCGA--AGAC-CCC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA------- +#=GR URS0000A76386_911092/1-94 5FK3_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((.................. +URS0000A7631C_911092/1-93 G-GCUUAUCAAGAG-AGG-G-UG-----------------AGCGA--CUGG-CGCGA--AGAU-CCC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA------- +#=GR URS0000A7631C_911092/1-93 5FK4_A_SS (.(((((((....(..((.(.(...................(((...{{{{.))).......).)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((.................. +URS0000A76359_911092/1-94 G-GCUUAUCAAGAG-AGG-G-AG-----------------AGCGA--CUGG-CGCGA--AGAA-CCC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA------- +#=GR URS0000A76359_911092/1-94 5FK5_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((.................. +URS0000A7635A_911092/1-94 G-GCUUAUCAAGAG-AGG-G-AG-----------------AGCGA--CUGG-CGCGA--AGAC-CCC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA------- +#=GR URS0000A7635A_911092/1-94 5FK6_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((.................. +URS0000A7635B_911092/1-94 G-GCUUAUCAAGAG-AGG-G-AG-----------------AGCGA--CUGG-CGCGA--AGAU-CCC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA------- +#=GR URS0000A7635B_911092/1-94 5FKD_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..).((..((.(.............................................................................)..)).)).....(}..}}}.(((((.................. +URS0000A7638A_911092/1-94 G-GCUUAUCAAGAG-AGG-G-UG-----------------AGCGA--CUGG-CGCGA--AGAG-CCC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA------- +#=GR URS0000A7638A_911092/1-94 5FKE_A_SS (.(((((((....(..((.(.(...................(((...{{{{.))).......).)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((.................. +URS0000A76399_911092/1-94 G-GCUUAUCAAGAG-AGG-G-CG-----------------AGCGA--CUGG-CGCGA--AGAU-CCC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA------- +#=GR URS0000A76399_911092/1-94 5FKF_A_SS (.(((((((.......((.(.....................(((...{{{{.))).........)))...(((..((.(.............................................................................)..)).)))....(}..}}}.(((((.................. +URS0000A76343_911092/1-94 G-GCUUAUCAAGAG-AGG-G-GG-----------------AGUGA--CUGG-CGCGA--AGAC-CCC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA------- +#=GR URS0000A76343_911092/1-94 5FKG_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((.................. +URS0000A76344_911092/1-94 G-GCUUAUCAAGAG-AGG-G-UG-----------------AGCGA--CUGG-CGCGA--AGAC-CCC--CGGCAACC-A-----------------------------------------------------------------GAA--------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA------- +#=GR URS0000A76344_911092/1-94 5FKH_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((.(.............................................................................)..)).)))....(}..}}}.(((((.................. +URS0002311979_119072/1-94 G-GCUUAUCAAGAG-AGG-G-CG-----------------AGGGA--CUGG-CCCGA--CGAC-CCC--CGGCAACC----------AG-------------------------------------------------------AA---------AU--GGUGCCA-AUUC--CUG-CAGCG--------GAA------- +#=GR URS0002311979_119072/1-94 7EAF_A_SS (.(((((((....(..((.(.....................(((...{{{{.))).........)))..)(((..((..........(....................................................................)..)).)))....(}..}}}.(((((.................. +#=GC SS_cons (.(((((((,,,,<.<<<.<.--.................-<<<_..AAAA.>>>--..----.>>>.>><<<<-<<.<.<<<._____.......................................................__>....>>>.--..>>>>>>,.,,>>>.>>.-.->.))))))).).. +#=GC RF ...............ggcc.cG.a.aa.gAUaAga.g.. +#=GC RNA_motif_k_turn ======================================= +#=GC RNA_ligand_SAM ==============================X======== +#=GC RNA_structural_elements ===========================][=P1=3p=]== +// diff --git a/src/jalview/gui/AppVarna.java b/src/jalview/gui/AppVarna.java index 6fac8fc..5273aaa 100644 --- a/src/jalview/gui/AppVarna.java +++ b/src/jalview/gui/AppVarna.java @@ -762,8 +762,9 @@ public class AppVarna extends JInternalFrame for (int i = 0; i < bytes.length; i++) { boolean ok = false; - // todo check for ((b >= 'a' && b <= 'z') || (b >= 'A' && b <= 'Z')) if - // wanted also + + ok = (bytes[i] >= 'a' && bytes[i] <= 'z') || (bytes[i]>= 'A' && bytes[i] <= 'Z'); + for (int j = 0; !ok && (j < PAIRS.length); j++) { if (bytes[i] == PAIRS[j]) diff --git a/test/jalview/gui/AppVarnaTest.java b/test/jalview/gui/AppVarnaTest.java index 17dbf5f..7936a4b 100644 --- a/test/jalview/gui/AppVarnaTest.java +++ b/test/jalview/gui/AppVarnaTest.java @@ -46,8 +46,11 @@ public class AppVarnaTest assertSame(struct, replaced); assertEquals("..{.([.<.].}.>)", AppVarna.replaceOddGaps("..{ ([*<-]?} >)")); - assertEquals("....", AppVarna.replaceOddGaps("cgta")); assertEquals("", AppVarna.replaceOddGaps("")); assertNull(AppVarna.replaceOddGaps(null)); + assertEquals("..{a([.<.].}A>)", + AppVarna.replaceOddGaps(" {a([*<-]?}A>)")); + assertEquals("..{B([.<.].}b>)", + AppVarna.replaceOddGaps(" {B([*<-]?}b>)")); } } diff --git a/test/jalview/io/StockholmFileTest.java b/test/jalview/io/StockholmFileTest.java index 10f368a..4a047c7 100644 --- a/test/jalview/io/StockholmFileTest.java +++ b/test/jalview/io/StockholmFileTest.java @@ -62,7 +62,7 @@ public class StockholmFileTest static String PfamFile = "examples/PF00111_seed.stk", RfamFile = "examples/RF00031_folded.stk", - RnaSSTestFile = "examples/rna_ss_test.stk"; + RnaSSTestFile = "examples/rna_ss_test.stk",RnaSS_fromRfamTestFile="examples/RF00162.stk"; @Test(groups = { "Functional" }) public void pfamFileIO() throws Exception @@ -723,6 +723,13 @@ public class StockholmFileTest { roundTripSSForRNA(aliFile, annFileFullWuss); } + + @Test(groups= { "Functional" }) + public void rfamSS() throws Exception { + testFileIOwithFormat(new File(RnaSS_fromRfamTestFile), FileFormat.Stockholm, 2, 1, + false, false, false); + } + @Test(groups = { "Functional" }) public void detectWussBrackets()