From: Ben Soares <b.soares@dundee.ac.uk>
Date: Thu, 1 Jun 2023 14:49:33 +0000 (+0100)
Subject: JAL-629 added data for test
X-Git-Tag: Release_2_11_3_0~14^2~5
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=0cb03d6f6feb66fdf2ce4e8663be8f5cdd81acce;p=jalview.git

JAL-629 added data for test
---

diff --git a/test/jalview/ws/dbsources/EBIAlphaFoldTest.java b/test/jalview/ws/dbsources/EBIAlphaFoldTest.java
index 076ee7e..b737042 100644
--- a/test/jalview/ws/dbsources/EBIAlphaFoldTest.java
+++ b/test/jalview/ws/dbsources/EBIAlphaFoldTest.java
@@ -6,7 +6,7 @@ import java.io.FileNotFoundException;
 import java.io.IOException;
 
 import org.json.simple.parser.ParseException;
-import org.junit.Assert;
+import org.testng.Assert;
 import org.testng.FileAssert;
 import org.testng.annotations.BeforeClass;
 import org.testng.annotations.DataProvider;
@@ -46,7 +46,7 @@ public class EBIAlphaFoldTest
             new Sequence("Dummy/1-2000", "ASDASDA"),
             EBIAlfaFold.parseJSONtoPAEContactMatrix(
                     new FileInputStream(paeFile)));
-    Assert.assertNotEquals("No data from " + paeFile, cm.getMax(), 0);
+    Assert.assertNotEquals(cm.getMax(), 0.0f, "No data from " + paeFile);
   }
 
   @Test(groups = { "Functional" }, dataProvider = "getPDBandPAEfiles")
@@ -71,13 +71,32 @@ public class EBIAlphaFoldTest
     {
       boolean done = EBIAlfaFold.importPaeJSONAsContactMatrixToStructure(
               smArray, paeInput, "label");
-      Assert.assertTrue(
-              "Import of '" + paeFile + "' didn't complete successfully",
-              done);
+      Assert.assertTrue(done,
+              "Import of '" + paeFile + "' didn't complete successfully");
     } catch (IOException | ParseException e)
     {
       e.printStackTrace();
     }
+  }
 
+  @DataProvider(name = "getPDBandPAEfiles")
+  public Object[][] getPDBandPAEfiles()
+  {
+    return new String[][] {
+        //
+        /*
+         */
+        { "examples/test_fab41.result/sample.a2m",
+            "examples/test_fab41.result/test_fab41_predicted_aligned_error_v1.json" },
+        /*
+        { "examples/AlphaFold/AF-A0A1U8FD60-F1-model_v4.pdb",
+            "examples/AlphaFold/AF-A0A1U8FD60-F1-predicted_aligned_error_v4.json" },
+        { "examples/AlphaFold/AF-Q5VSL9-F1-model_v4.pdb",
+            "examples/AlphaFold/AF-Q5VSL9-F1-predicted_aligned_error_v4.json" },
+        { "examples/AlphaFold/AF-Q5VSL9-F1-model_v4.pdb",
+            "examples/AlphaFold/AF-Q5VSL9-F1-predicted_aligned_error_v4_2023.json" },
+         */
+    };
   }
+
 }