From: Jim Procter <jprocter@issues.jalview.org>
Date: Tue, 9 May 2017 16:58:52 +0000 (+0100)
Subject: JAL-2509 verify stockholm parser’s bracket regex is working for all WUSS notation
X-Git-Tag: Release_2_10_2~3^2~88^2~10
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=0cc7012545b54289025e8c6f109b4f26dc61dae9;hp=5edb9a0c935f7c153bbddedfe2ce36bb389dbb53;p=jalview.git

JAL-2509 verify stockholm parser’s bracket regex is working for all WUSS notation
---

diff --git a/test/jalview/io/StockholmFileTest.java b/test/jalview/io/StockholmFileTest.java
index bd1400b..f6b39af 100644
--- a/test/jalview/io/StockholmFileTest.java
+++ b/test/jalview/io/StockholmFileTest.java
@@ -461,6 +461,20 @@ public class StockholmFileTest
     roundTripSSForRNA(aliFile, annFileFullWuss);
   }
 
+  @Test(groups = { "Functional" })
+  public void detectWussBrackets()
+  {
+    for (char ch : new char[] { '{', '}', '[', ']', '(', ')', '<', '>' })
+    {
+      Assert.assertTrue(StockholmFile.DETECT_BRACKETS.matchAt("" + ch, 0),
+              "Didn't recognise " + ch + " as a WUSS bracket");
+    }
+    for (char ch : new char[] { '@', '!', 'V', 'Q', '*', ' ', '-', '.' })
+    {
+      Assert.assertFalse(StockholmFile.DETECT_BRACKETS.matchAt("" + ch, 0),
+              "Shouldn't recognise " + ch + " as a WUSS bracket");
+    }
+  }
   private static void roundTripSSForRNA(String aliFile, String annFile)
           throws Exception
   {