From: Ben Soares Date: Wed, 17 May 2023 11:27:37 +0000 (+0100) Subject: JAL-629 delete stray files X-Git-Tag: Release_2_11_4_0~322 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=0cd1599cb28327d2d23ba24f064e0e68fbf86d71;p=jalview.git JAL-629 delete stray files --- diff --git a/test/jalview/io/uniref50-relaxed.phy b/test/jalview/io/uniref50-relaxed.phy deleted file mode 100644 index d444d13..0000000 --- a/test/jalview/io/uniref50-relaxed.phy +++ /dev/null @@ -1,48 +0,0 @@ -15 157 -FER_CAPAA -----------------------------------------------------------A -FER_CAPAN MA------SVSATMISTSFMPRKPAVTSL-KPIPNVGE--ALFGLKS-A--NGGKVTCMA -FER1_SOLLC MA------SISGTMISTSFLPRKPAVTSL-KAISNVGE--ALFGLKS-G--RNGRITCMA -Q93XJ9_SOLTU MA------SISGTMISTSFLPRKPVVTSL-KAISNVGE--ALFGLKS-G--RNGRITCMA -FER1_PEA MATT---PALYGTAVSTSFLRTQPMPMSV-TTTKAFSN--GFLGLKT-SLKRGDLAVAMA -Q7XA98_TRIPR MATT---PALYGTAVSTSFMRRQPVPMSV-ATTTTTKAFPSGFGLKSVSTKRGDLAVAMA -FER1_MESCR MAAT--TAALSGATMSTAFAPK--TPPMTAALPTNVGR--ALFGLKS-SASR-GRVTAMA -FER1_SPIOL MAAT--TTTMMG--MATTFVPKPQAPPMMAALPSNTGR--SLFGLKT-GSR--GGRMTMA -FER3_RAPSA -----------------------------------------------------------A -FER2_ARATH MAST----ALSSAIVGTSFIRRSPAPISLRSLPSANTQ--SLFGLKS-GTARGGRVTAMA -FER_BRANA -----------------------------------------------------------A -FER1_ARATH MAST----ALSSAIVSTSFLRRQQTPISLRSLPFANTQ--SLFGLKS-STARGGRVTAMA -Q93Z60_ARATH MAST----ALSSAIVSTSFLRRQQTPISLRSLPFANTQ--SLFGLKS-STARGGRVTAMA -FER1_MAIZE MATVLGSPRAPAFFFSSSSLRAAPAPTAV--ALPAAKV--GIMGRSA-SSRR--RLRAQA -O80429_MAIZE MAAT---------ALSMSILR---APPPCFSSPLRLRV--AVAKPLA-APMRRQLLRAQA - -SYKVKLITPDGPIEFDCPDDVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDG -SYKVKLITPDGPIEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDG -SYKVKLITPEGPIEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDG -SYKVKLITPDGPIEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDG -SYKVKLVTPDGTQEFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDG -TYKVKLITPEGPQEFDCPDDVYILDHAEEVGIELPYSCRAGSCSSCAGKVVNGNVNQEDG -AYKVTLVTPEGKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDG -AYKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQ -TYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQ -TYKVKFITPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQ -TYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDE -TYKVKFITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQ -TYKVKFITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQ -TYNVKLITPEGEVELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQ -TYNVKLITPEGEVELQVPDDVYILDFAEEEGIDLPFSCRAGSCSSCAGKVVSGSVDQSDQ - -NFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAELVG- -NFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAELVG- -NFLDEDQEAAGFVLTCVAYPKGDVTIETHKEEELTA- -KFLDDDQEAAGFVLTCVAYPKCDVTIETHKEEELTA- -SFLDDEQIEAGFVLTCVAYPTSDVVIETHKEEDLTA- -SFLDDEQIEGGWVLTCVAFPTSDVTIETHKEEELTA- -SFLDDDQIKEGWVLTCVAYPTGDVTIETHKEEELTA- -SFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEELTA- -SFLDDDQIAEGFVLTCAAYPTSDVTIETHREEDMV-- -SFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDIV-- -SFLDDDQIAEGFVLTCAAYPTSDVTIETHKEEELV-- -SFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEAIM-- -SFLDD-------------------------------- -SYLDDGQIADGWVLTCHAYPTSDVVIETHKEEELTGA -SFLNDNQVADGWVLTCAAYPTSDVVIETHKEDDLL-- diff --git a/test/jalview/io/uniref50-strict.phy b/test/jalview/io/uniref50-strict.phy deleted file mode 100644 index ae38cec..0000000 --- a/test/jalview/io/uniref50-strict.phy +++ /dev/null @@ -1,48 +0,0 @@ -15 157 -FER_CAPAA -----------------------------------------------------------A -FER_CAPAN MA------SVSATMISTSFMPRKPAVTSL-KPIPNVGE--ALFGLKS-A--NGGKVTCMA -FER1_SOLLCMA------SISGTMISTSFLPRKPAVTSL-KAISNVGE--ALFGLKS-G--RNGRITCMA -Q93XJ9_SOLMA------SISGTMISTSFLPRKPVVTSL-KAISNVGE--ALFGLKS-G--RNGRITCMA -FER1_PEA MATT---PALYGTAVSTSFLRTQPMPMSV-TTTKAFSN--GFLGLKT-SLKRGDLAVAMA -Q7XA98_TRIMATT---PALYGTAVSTSFMRRQPVPMSV-ATTTTTKAFPSGFGLKSVSTKRGDLAVAMA -FER1_MESCRMAAT--TAALSGATMSTAFAPK--TPPMTAALPTNVGR--ALFGLKS-SASR-GRVTAMA -FER1_SPIOLMAAT--TTTMMG--MATTFVPKPQAPPMMAALPSNTGR--SLFGLKT-GSR--GGRMTMA -FER3_RAPSA-----------------------------------------------------------A -FER2_ARATHMAST----ALSSAIVGTSFIRRSPAPISLRSLPSANTQ--SLFGLKS-GTARGGRVTAMA -FER_BRANA -----------------------------------------------------------A -FER1_ARATHMAST----ALSSAIVSTSFLRRQQTPISLRSLPFANTQ--SLFGLKS-STARGGRVTAMA -Q93Z60_ARAMAST----ALSSAIVSTSFLRRQQTPISLRSLPFANTQ--SLFGLKS-STARGGRVTAMA -FER1_MAIZEMATVLGSPRAPAFFFSSSSLRAAPAPTAV--ALPAAKV--GIMGRSA-SSRR--RLRAQA -O80429_MAIMAAT---------ALSMSILR---APPPCFSSPLRLRV--AVAKPLA-APMRRQLLRAQA - -SYKVKLITPDGPIEFDCPDDVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDG -SYKVKLITPDGPIEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDG -SYKVKLITPEGPIEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDG -SYKVKLITPDGPIEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDG -SYKVKLVTPDGTQEFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDG -TYKVKLITPEGPQEFDCPDDVYILDHAEEVGIELPYSCRAGSCSSCAGKVVNGNVNQEDG -AYKVTLVTPEGKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDG -AYKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQ -TYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQ -TYKVKFITPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQ -TYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDE -TYKVKFITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQ -TYKVKFITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQ -TYNVKLITPEGEVELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQ -TYNVKLITPEGEVELQVPDDVYILDFAEEEGIDLPFSCRAGSCSSCAGKVVSGSVDQSDQ - -NFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAELVG- -NFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAELVG- -NFLDEDQEAAGFVLTCVAYPKGDVTIETHKEEELTA- -KFLDDDQEAAGFVLTCVAYPKCDVTIETHKEEELTA- -SFLDDEQIEAGFVLTCVAYPTSDVVIETHKEEDLTA- -SFLDDEQIEGGWVLTCVAFPTSDVTIETHKEEELTA- -SFLDDDQIKEGWVLTCVAYPTGDVTIETHKEEELTA- -SFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEELTA- -SFLDDDQIAEGFVLTCAAYPTSDVTIETHREEDMV-- -SFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDIV-- -SFLDDDQIAEGFVLTCAAYPTSDVTIETHKEEELV-- -SFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEAIM-- -SFLDD-------------------------------- -SYLDDGQIADGWVLTCHAYPTSDVVIETHKEEELTGA -SFLNDNQVADGWVLTCAAYPTSDVVIETHKEDDLL-- diff --git a/test/jalview/io/uniref50.phy b/test/jalview/io/uniref50.phy deleted file mode 100644 index ae38cec..0000000 --- a/test/jalview/io/uniref50.phy +++ /dev/null @@ -1,48 +0,0 @@ -15 157 -FER_CAPAA -----------------------------------------------------------A -FER_CAPAN MA------SVSATMISTSFMPRKPAVTSL-KPIPNVGE--ALFGLKS-A--NGGKVTCMA -FER1_SOLLCMA------SISGTMISTSFLPRKPAVTSL-KAISNVGE--ALFGLKS-G--RNGRITCMA -Q93XJ9_SOLMA------SISGTMISTSFLPRKPVVTSL-KAISNVGE--ALFGLKS-G--RNGRITCMA -FER1_PEA MATT---PALYGTAVSTSFLRTQPMPMSV-TTTKAFSN--GFLGLKT-SLKRGDLAVAMA -Q7XA98_TRIMATT---PALYGTAVSTSFMRRQPVPMSV-ATTTTTKAFPSGFGLKSVSTKRGDLAVAMA -FER1_MESCRMAAT--TAALSGATMSTAFAPK--TPPMTAALPTNVGR--ALFGLKS-SASR-GRVTAMA -FER1_SPIOLMAAT--TTTMMG--MATTFVPKPQAPPMMAALPSNTGR--SLFGLKT-GSR--GGRMTMA -FER3_RAPSA-----------------------------------------------------------A -FER2_ARATHMAST----ALSSAIVGTSFIRRSPAPISLRSLPSANTQ--SLFGLKS-GTARGGRVTAMA -FER_BRANA -----------------------------------------------------------A -FER1_ARATHMAST----ALSSAIVSTSFLRRQQTPISLRSLPFANTQ--SLFGLKS-STARGGRVTAMA -Q93Z60_ARAMAST----ALSSAIVSTSFLRRQQTPISLRSLPFANTQ--SLFGLKS-STARGGRVTAMA -FER1_MAIZEMATVLGSPRAPAFFFSSSSLRAAPAPTAV--ALPAAKV--GIMGRSA-SSRR--RLRAQA -O80429_MAIMAAT---------ALSMSILR---APPPCFSSPLRLRV--AVAKPLA-APMRRQLLRAQA - -SYKVKLITPDGPIEFDCPDDVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDG -SYKVKLITPDGPIEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDG -SYKVKLITPEGPIEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDG -SYKVKLITPDGPIEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDG -SYKVKLVTPDGTQEFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDG -TYKVKLITPEGPQEFDCPDDVYILDHAEEVGIELPYSCRAGSCSSCAGKVVNGNVNQEDG -AYKVTLVTPEGKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDG -AYKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQ -TYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQ -TYKVKFITPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQ -TYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDE -TYKVKFITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQ -TYKVKFITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQ -TYNVKLITPEGEVELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQ -TYNVKLITPEGEVELQVPDDVYILDFAEEEGIDLPFSCRAGSCSSCAGKVVSGSVDQSDQ - -NFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAELVG- -NFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAELVG- -NFLDEDQEAAGFVLTCVAYPKGDVTIETHKEEELTA- -KFLDDDQEAAGFVLTCVAYPKCDVTIETHKEEELTA- -SFLDDEQIEAGFVLTCVAYPTSDVVIETHKEEDLTA- -SFLDDEQIEGGWVLTCVAFPTSDVTIETHKEEELTA- -SFLDDDQIKEGWVLTCVAYPTGDVTIETHKEEELTA- -SFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEELTA- -SFLDDDQIAEGFVLTCAAYPTSDVTIETHREEDMV-- -SFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDIV-- -SFLDDDQIAEGFVLTCAAYPTSDVTIETHKEEELV-- -SFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEAIM-- -SFLDD-------------------------------- -SYLDDGQIADGWVLTCHAYPTSDVVIETHKEEELTGA -SFLNDNQVADGWVLTCAAYPTSDVVIETHKEDDLL--