From: Jim Procter <jprocter@dundee.ac.uk>
Date: Thu, 20 Nov 2014 14:49:36 +0000 (+0000)
Subject: JAL-1569 remove log output during RNA secondary structure processing
X-Git-Tag: Jalview_2_9~148^2~19
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=0d99573a880dde31be87debed52ef20b9481f921;p=jalview.git

JAL-1569 remove log output during RNA secondary structure processing
---

diff --git a/src/jalview/analysis/Rna.java b/src/jalview/analysis/Rna.java
index e4a0d76..227bf09 100644
--- a/src/jalview/analysis/Rna.java
+++ b/src/jalview/analysis/Rna.java
@@ -26,6 +26,10 @@
 
 package jalview.analysis;
 
+import jalview.analysis.SecStrConsensus.SimpleBP;
+import jalview.datamodel.SequenceFeature;
+import jalview.util.MessageManager;
+
 import java.util.ArrayList;
 import java.util.Arrays;
 import java.util.HashSet;
@@ -33,10 +37,6 @@ import java.util.Hashtable;
 import java.util.Stack;
 import java.util.Vector;
 
-import jalview.analysis.SecStrConsensus.SimpleBP;
-import jalview.datamodel.SequenceFeature;
-import jalview.util.MessageManager;
-
 public class Rna
 {
 
@@ -65,7 +65,7 @@ public class Rna
     {
       for (int i = 0; i < openingPars.length; i++)
       {
-        System.out.println(closingPars[i] + "->" + openingPars[i]);
+        // System.out.println(closingPars[i] + "->" + openingPars[i]);
         put(closingPars[i], openingPars[i]);
       }
     }
@@ -107,7 +107,6 @@ public class Rna
   public static Vector<SimpleBP> GetSimpleBPs(CharSequence line)
           throws WUSSParseException
   {
-    System.out.println(line);
     Hashtable<Character, Stack<Integer>> stacks = new Hashtable<Character, Stack<Integer>>();
     Vector<SimpleBP> pairs = new Vector<SimpleBP>();
     int i = 0;