From: tva <tva@10.205.251.175>
Date: Thu, 6 Jun 2019 08:13:18 +0000 (+0100)
Subject: JAL-3285 fix FileLoader failing to load HMMER file
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=0e16119d6481a8325600d20e890424f5d2bf9d38;p=jalview.git

JAL-3285 fix FileLoader failing to load HMMER file
---

diff --git a/src/jalview/io/FileLoader.java b/src/jalview/io/FileLoader.java
index 6ac0869..b6701a3 100755
--- a/src/jalview/io/FileLoader.java
+++ b/src/jalview/io/FileLoader.java
@@ -443,7 +443,7 @@ public class FileLoader implements Runnable
             {
               AlignmentI alignment = viewport.getAlignment();
               SequenceI seq = alignment
-                      .getSequenceAt(alignment.getAbsoluteHeight() - 1);
+                      .getSequenceAt(alignment.getHeight() - 1);
               if (seq.hasHMMProfile())
               {
                 /*