From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Thu, 24 Feb 2011 08:54:24 +0000 (+0000)
Subject: Edited wiki page PhyloBioRuby through web user interface.
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=0e9ba580fb2b0d19fc6f116cee31575baa6f19b2;p=jalview.git

Edited wiki page PhyloBioRuby through web user interface.
---

diff --git a/wiki/PhyloBioRuby.wiki b/wiki/PhyloBioRuby.wiki
index 08b02e1..e3da58e 100644
--- a/wiki/PhyloBioRuby.wiki
+++ b/wiki/PhyloBioRuby.wiki
@@ -9,7 +9,7 @@ Tutorial for multiple sequence alignments and phylogenetic methods in !BioRuby -
 
 == Multiple Sequence Alignment Input and Output ==
 
-=== Reading in a Multiple Sequence Alignments from a File ===
+=== Reading in a Multiple Sequence Alignment from a File ===
 
 _... to be done_
 
@@ -60,6 +60,13 @@ report.align.each { |s| puts s.to_s }
 #
 }}}
 
+References:
+
+* Katoh, Toh (2008) "Recent developments in the MAFFT multiple sequence alignment program" Briefings in Bioinformatics 9:286-298 
+
+* Katoh, Toh 2010 (2010) "Parallelization of the MAFFT multiple sequence alignment program" Bioinformatics 26:1899-1900 
+
+
 
 === Muscle ===
 
@@ -82,6 +89,9 @@ report.align.each { |s| puts s.to_s }
 #
 }}}
 
+References:
+
+* Edgar, R.C. (2004) "MUSCLE: multiple sequence alignment with high accuracy and high throughput" Nucleic Acids Res 32(5):1792-1797
 
 == Manipulating Multiple Sequence Alignments ==