From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Tue, 5 Jul 2011 11:21:26 +0000 (+0100)
Subject: Revert "Revert "needed for linkedapplets_ng.html (JAL-859,JAL-469)""
X-Git-Tag: Release_2_7~151
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=0fb619a3584d17c65273964abe933701d41d0233;p=jalview.git

Revert "Revert "needed for linkedapplets_ng.html (JAL-859,JAL-469)""

This reverts commit 37b210ecad3c132b87c525f84e3b754a4edf12a6.
---

diff --git a/examples/plantfdx.annotations b/examples/plantfdx.annotations
new file mode 100644
index 0000000..b4ed4a4
--- /dev/null
+++ b/examples/plantfdx.annotations
@@ -0,0 +1,7 @@
+JALVIEW_ANNOTATION
+# Created: Mon Dec 11 10:43:00 GMT 2006
+
+NO_GRAPH	Secondary Structure	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||1,E|E|E|||||2,E|E|E|E|E|E|E|E|||||3,H|H|H|H|H|||||||||||Fe|||||Fe|||Fe||4,E|E||||||5,E|E|||||||||||6,H|H|H|H||7,E||||Fe|||E|E||||9,E|E|E|E|E||||||||||
+NO_GRAPH	Iron Sulphur Contacts	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||Fe|||||Fe|||Fe||||||||||||||||||||||||||||||Fe||||||||||||||||||||||
+COLOUR	Conservation	5d1500
+COLOUR	Quality	560c00
diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index 8387089..80b01d0 100644
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -144,7 +144,8 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
     alignPanel.annotationSpaceFillerHolder.addKeyListener(this);
     alignPanel.alabels.addKeyListener(this);
     createAlignFrameWindow(embedded, title);
-    alignPanel.validate();
+
+    validate();
     alignPanel.adjustAnnotationHeight();
     alignPanel.paintAlignment(true);
   }