From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Wed, 19 Oct 2011 17:28:47 +0000 (+0100)
Subject: new base class to hold core visualization settings for a jalview alignment view
X-Git-Tag: Jalview_2_9~566^2~12
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=0ff82a5d931e19c572695992cd0f59346819db56;p=jalview.git

new base class to hold core visualization settings for a jalview alignment view
---

diff --git a/src/jalview/datamodel/AlignmentViewport.java b/src/jalview/datamodel/AlignmentViewport.java
new file mode 100644
index 0000000..7573401
--- /dev/null
+++ b/src/jalview/datamodel/AlignmentViewport.java
@@ -0,0 +1,22 @@
+package jalview.datamodel;
+
+/**
+ * base class holding visualization and analysis attributes for an active alignment view displayed in the GUI
+ * @author jimp
+ *
+ */
+public class AlignmentViewport
+{
+
+  /**
+   * percentage gaps allowed in a column before all amino acid properties should be considered unconserved
+   */
+  int ConsPercGaps = 25; // JBPNote : This should be a scalable property!
+
+
+  public int getConsPercGaps()
+  {
+    return ConsPercGaps;
+  }
+
+}