From: cmzmasek@gmail.com Date: Thu, 19 Dec 2013 02:23:52 +0000 (+0000) Subject: in progress X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=102c048bbb165821f9e5462a60662599ba755b36;p=jalview.git in progress --- diff --git a/forester/data/tol_153.xml b/forester/data/tol_153.xml deleted file mode 100644 index 1b5a1e9..0000000 --- a/forester/data/tol_153.xml +++ /dev/null @@ -1,7874 +0,0 @@ - - - - - - 131567 - cellular organisms - - - - Neomura - - - - 2759 - Eukaryota - superkingdom - - - Unikonta - - - 33154 - Opisthokonta - Fungi/Metazoa group - - - - Holozoa - - - Choanoflagellatea & Metazoa - - - 33208 - Metazoa - kingdom - - - - 6072 - Eumetazoa - - - - - Bilateria & Cnidaria - - - 33213 - Bilateria - - - - 33511 - Deuterostomia - - - - - - 7711 - Chordata - phylum - - - Urochordata & Vertebrata - - - 7742 - Vertebrata - - - - 7776 - Gnathostomata - jawed vertebrates - superclass - - - - 117571 - Euteleostomi - bony vertebrates - - - - 8287 - Sarcopterygii - lobe-finned fish - - - - 32523 - Tetrapoda - - - - 32524 - Amniota - - - - 40674 - Mammalia - class - - - Theria - - - 9347 - Eutheria - Placental mammals - - - The new framework for understanding placental mammal evolution - - - - Boreoeutheria - Boreotheria - - - - 314146 - Euarchontoglires - superorder - - - - Euarchonta - - - - 9443 - Primates - order - - - - 376913 - Haplorrhini - suborder - - - - 314293 - Simiiformes - infraorder - - - - 9526 - Catarrhini - - - - 314295 - Hominoidea - Apes - superfamily - - - - 9604 - Hominidae - Great apes - family - - - - 207598 - Homininae - subfamily - - - - Hominini - tribe - - - - 9606 - HUMAN - Homo sapiens - Human - species - http://www.thehindu.com/multimedia/dynamic/00029/IN05_DARWIN_29896f.jpg - - - - - 9598 - PANTR - Pan troglodytes - Chimpanzee - species - http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Schimpanse_zoo-leipig.jpg/800px-Schimpanse_zoo-leipig.jpg - - - - - - 9595 - GORGO - Gorilla gorilla gorilla - Western lowland gorilla - subspecies - http://upload.wikimedia.org/wikipedia/commons/c/c7/Stavenn_Gorilla_gorilla_00.jpg - - - - - - 9601 - PONAB - Pongo abelii - Sumatran orangutan - Pongo pygmaeus abelii - species - http://www.ism.ac.jp/~hasegawa/photos/animal3b.jpg - - - - - - 61853 - NOMLE - Nomascus leucogenys - Northern white-cheeked gibbon - Hylobates leucogenys - Hylobates concolor leucogenys - species - http://uswest.ensembl.org/img/species/pic_Nomascus_leucogenys.png - http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Hylobates_concolor2.jpg/450px-Hylobates_concolor2.jpg - - - - - - 9528 - Cercopithecinae - subfamily - - - - 9544 - MACMU - Macaca mulatta - Rhesus macaque - species - http://www.our-pets.net/images/rhesus1.jpg - - - - - 9557 - PAPHA - Papio hamadryas - Hamadryas baboon - species - http://pin.primate.wisc.edu/fs/sheets/images/227lg.jpg - - - - - - - 9483 - CALJA - Callithrix jacchus - White-tufted-ear marmoset - Callithrix jacchus jacchus - species - http://www.arthurgrosset.com/mammals/photos/caljac28086.jpg - - - - - - 9478 - TARSY - Tarsius syrichta - Philippine tarsier - species - http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0408/1425.jpeg - - - - - - 376911 - Strepsirrhini - suborder - - - - 30608 - MICMU - Microcebus murinus - Lesser mouse lemur - Gray Mouse Lemur - species - http://daniel.montagnon.pagesperso-orange.fr/images/MicrocbusMurinus.jpg - - - - - 30611 - OTOGA - Otolemur garnettii - Garnett's greater bushbaby - Galago garnetti - Small-eared galago - Garnett's greater bushbaby - species - http://www.mbweni.com/images/Mbweni%20Images/naturetrail/small-earedgalago.jpg - - - - - - - 37347 - TUPBE - Tupaia belangeri - Common tree shrew - Tupaia glis belangeri - species - http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Tupaia_belangeri.JPG/800px-Tupaia_belangeri.JPG - - - - - - 314147 - Glires - Rodents and rabbits - - - - 9989 - Rodentia - order - - - Hystricomorpha & Sciurognathi - - Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades. - - - - 33553 - Sciurognathi - suborder - - - - 337687 - Muroidea - - - - 39107 - Murinae - subfamily - - - - 10090 - MOUSE - Mus musculus - Mouse - species - http://www.nsrl.ttu.edu/tmot1/images/mus_musc.jpg - - - - - 10116 - RAT - Rattus norvegicus - Rat - species - http://upload.wikimedia.org/wikipedia/commons/0/01/Rattus_norvegicus_1.jpg - - - - - - 10036 - MESAU - Mesocricetus auratus - Golden hamster - species - http://upload.wikimedia.org/wikipedia/commons/thumb/8/85/Syrian_hamster_filling_his_cheek_pouches_with_Dandelion_leaves.JPG/800px-Syrian_hamster_filling_his_cheek_pouches_with_Dandelion_leaves.JPG - - - - - - 10020 - DIPOR - Dipodomys ordii - Ord's kangaroo rat - species - http://www.nsrl.ttu.edu/tmot1/images/dipoordi.jpg - - - - - - 33550 - Hystricognathi - suborder - - - - 10141 - CAVPO - Cavia porcellus - Guinea pig - species - http://archive.vetknowledge.com/files/images/guinea-pig---tan.jpg - - - - - 10181 - HETGA - Heterocephalus glaber - Naked mole rat - species - http://calphotos.berkeley.edu/imgs/512x768/9092_3191/3555/0080.jpeg - - - - - - - 43179 - SPETR - Spermophilus tridecemlineatus - Thirteen-lined ground squirrel - Ictidomys tridecemlineatus - species - http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/ADW_mammals/Rodentia/Spermophilus4345.jpg/medium.jpg - - - - - - 9975 - Lagomorpha - order - - - - 9978 - OCHPR - Ochotona princeps - Southern American pika - species - http://upload.wikimedia.org/wikipedia/commons/3/3b/Ochotona_princeps.jpg - - - - - 9986 - RABIT - Oryctolagus cuniculus - Rabbit - species - http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Rabbit_in_montana.jpg/675px-Rabbit_in_montana.jpg - - - - - - - - 314145 - Laurasiatheria - superorder - - - - Scrotifera - - - Perissodactyla & Cetartiodactyla & Chiroptera - - Perissodactyla & Cetartiodactyla - - - 91561 - Cetartiodactyla - Even-toed ungulates - - - Cetruminantia & Suina - - - Cetruminantia - - - - 9895 - Bovidae - family - - - - 9913 - BOVIN - Bos taurus - Bovine - Bos bovis - species - http://bioweb.uwlax.edu/bio203/s2007/hayes_katy/images/DSC01638.JPG - - - - - 9940 - SHEEP - Ovis aries - Sheep - species - http://animaldiversity.ummz.umich.edu/site/resources/james_dowlinghealey/blacksheep.jpg/medium.jpg - - - - - - 9721 - Cetacea - Whales - order - - - - 9771 - BALMU - Balaenoptera musculus - Blue whale - species - http://2.bp.blogspot.com/_W90V87w3sr8/TT63uRT_U9I/AAAAAAAAAo8/to9O8zEeo7k/s1600/bluewhale.jpg - - - - - 9739 - TURTR - Tursiops truncatus - Atlantic bottle-nosed dolphin - Delphinus truncatus - species - http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Bottlenose_Dolphin_KSC04pd0178.jpg/800px-Bottlenose_Dolphin_KSC04pd0178.jpg - - - - - - - 9823 - PIG - Sus scrofa - Pig - species - http://www.batraciens-reptiles.com/sus%20scrofa2.jpg - - - - - - 30538 - LAMPA - Lama guanicoe pacos - Alpaca - Lama pacos - species - http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0658.jpeg - - - - - - 9796 - HORSE - Equus caballus - Horse - species - http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0801/0088.jpeg - - - - - - 9397 - Chiroptera - Bats - order - - - - 59463 - MYOLU - Myotis lucifugus - Little brown bat - species - http://biology.lakeheadu.ca/uploads/Nature_photography/brown_bat.jpg - - - - - 132908 - PTEVA - Pteropus vampyrus - Large flying fox - species - http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Pteropus_vampyrus1.jpg/412px-Pteropus_vampyrus1.jpg - - - - - - Carnivora - - 33554 - Carnivora - order - - - - 379584 - Caniformia - suborder - - - - 9646 - AILME - Ailuropoda melanoleuca - Giant panda - species - http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Giant_Panda_2004-03-2.jpg/800px-Giant_Panda_2004-03-2.jpg - - - - - 9615 - CANFA - Canis familiaris - Dog - Canis lupus familiaris - subspecies - http://upload.wikimedia.org/wikipedia/commons/a/ab/Wikilabrador_jardin.JPG - - - - - - 9685 - FELCA - Felis catus - Cat - Felis silvestris catus - species - http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Domestic_cat_cropped.jpg/755px-Domestic_cat_cropped.jpg - - - - - - - 9362 - Insectivora - hedgehogs, shrews, moles and others - order - - - - 9365 - ERIEU - Erinaceus europaeus - Western European hedgehog - species - http://upload.wikimedia.org/wikipedia/commons/d/d4/Igel01.jpg - - - - - 42254 - SORAR - Sorex araneus - Eurasian common shrew - European shrew - species - http://www.batraciens-reptiles.com/musaraigne2.jpg - - - - - - - - Atlantogenata - - - - 311790 - Afrotheria - superorder - - - - Paenungulata - - - - 9785 - LOXAF - Loxodonta africana - African savanna elephant - species - http://animaldiversity.ummz.umich.edu/site/resources/susan_hoffman/elephants.jpg - - - - - 9813 - PROCA - Procavia capensis - Cape hyrax - Rock dassie - species - http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0460.jpeg - - - - - - 9371 - ECHTE - Echinops telfairi - Lesser hedgehog tenrec - species - http://animaldiversity.ummz.umich.edu/site/resources/david_kupitz/etelfairi.jpg - - - - - - 9348 - Xenarthra - Edentata - superorder - - - - 9358 - CHOHO - Choloepus hoffmanni - Hoffmann's two-fingered sloth - species - http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Sloth8.jpg/800px-Sloth8.jpg - - - - - 9361 - DASNO - Dasypus novemcinctus - Nine-banded armadillo - species - http://anthropometaphors.files.wordpress.com/2008/11/nine-banded-armadillo41.jpg - - - - - - - - 9263 - Metatheria - Marsupials - - - First combined cladistic analysis of marsupial mammal interrelationships - - - - - - Eometatheria - - - - 9315 - MACEU - Macropus eugenii - Tammar wallaby - species - http://upload.wikimedia.org/wikipedia/commons/d/de/Macropus_eugenii.jpg - - - - - 9305 - SARHA - Sarcophilus harrisii - Tasmanian devil - Sarcophilus laniarius - species - http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg/727px-Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg - - - - - - 13616 - MONDO - Monodelphis domestica - Short-tailed gray opossum - species - http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/classic/monodelphis.jpg/medium.jpg - - - - - - - 9258 - ORNAN - Ornithorhynchus anatinus - Duckbill platypus - species - http://upload.wikimedia.org/wikipedia/commons/1/12/Platypus_BrokenRiver_QLD_Australia2.png - - - - - - 8457 - Sauropsida - - - Archosauria & Testudines - - The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan - - - - - - - - 8492 - Archosauria - - - Neognathae - - 8825 - Neognathae - superorder - - - Phasianidae & Anatidae (waterfowl) - - - 9005 - Phasianidae - family - - - - 9031 - CHICK - Gallus gallus - Chicken - Gallus domesticus - species - http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Rooster04_adjusted.jpg/800px-Rooster04_adjusted.jpg - - - - - 9103 - MELGA - Meleagris gallopavo - Common turkey - species - http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0205/0858.jpeg - - - - - - 8839 - ANAPL - Anas platyrhynchos - Domestic duck - Anas boschas - species - http://content.ornith.cornell.edu/UEWebApp/images/MPR_070302_100009_L.jpg - - - - - - 59729 - TAEGU - Taeniopygia guttata - Zebra finch - Poephila guttata - species - http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg/355px-Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg - - - - - - 8496 - ALLMI - Alligator mississippiensis - American alligator - species - http://www.herpcenter.com/reptile-caresheets/images/american_alligator.jpg - - - - - - 13735 - PELSI - Pelodiscus sinensis - (Wiegmann, 1835) Cox et al. 1998 - Chinese softshell turtle - Trionyx sinensis - species - http://www.chelonia.org/PsinensisTR1.jpg - - - - - - 28377 - ANOCA - Anolis carolinensis - Voigt, 1832 - Green anole - American chameleon - species - http://content61.eol.org/content/2009/09/20/01/05528_580_360.jpg - http://content61.eol.org/content/2008/10/08/13/66818_580_360.jpg - http://upload.wikimedia.org/wikipedia/commons/thumb/5/5a/Anolis_carolinensis.jpg/800px-Anolis_carolinensis.jpg - - - - - - - 8353 - Xenopus - genus - - - - 8355 - XENLA - Xenopus laevis - Daudin, 1802 - African clawed frog - Bufo laevis - species - http://upload.wikimedia.org/wikipedia/commons/e/e3/Xenopus_laevis.jpg - - - - - 8364 - XENTR - Xenopus tropicalis - Western clawed frog - Silurana tropicalis - species - http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg - - - - - - - 7897 - LATCH - Latimeria chalumnae - West Indian ocean coelacanth - species - http://marinebio.org/upload/Latimeria-chalumnae/1.jpg - http://images.nationalgeographic.com/wpf/media-live/photos/000/005/cache/coelacanth_501_600x450.jpg - - - - - Teleostei - - 32443 - Teleostei - - - - 123368 - Acanthomorpha - - - - 32485 - Percomorpha - - - - 129949 - Smegmamorpha - - - - 32456 - Atherinomorpha - - - - 8090 - ORYLA - Oryzias latipes - Medaka fish - Japanese ricefish - species - http://upload.wikimedia.org/wikipedia/commons/4/49/Nihonmedaka.jpg - - - - - 8083 - XIPMA - Xiphophorus maculatus - Guenther, 1866 - Southern platyfish - Platypoecilus maculatus - species - http://upload.wikimedia.org/wikipedia/commons/6/6b/Poissons_06.jpg - - - - - - 69293 - GASAC - Gasterosteus aculeatus - Three-spined stickleback - species - http://www.jjphoto.dk/fish_archive/freshwater/gasterosteus_aculeatus.jpg - - - - - - 31031 - Tetraodontidae - puffers - family - - - - 31033 - TAKRU - Takifugu rubripes - Japanese pufferfish - Fugu rubripes - species - http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Fugu_in_Tank.jpg/800px-Fugu_in_Tank.jpg - - - - - 99883 - TETNG - Tetraodon nigroviridis - Green puffer - Chelonodon nigroviridis - species - http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Tetraodon_nigroviridis_1.jpg/800px-Tetraodon_nigroviridis_1.jpg - - - - - - 8128 - ORENI - Tilapia nilotica - Linnaeus, 1758 - Nile tilapia - Tilapia nilotica - species - http://www.jjphoto.dk/fish_archive/warm_freshwater/oreochromis_niloticus_niloticus.jpg - - - - - - 8049 - GADMO - Gadus morhua - Atlantic cod - species - http://www.marinbi.com/g-morhua.jpg - - - - - - 7955 - DANRE - Danio rerio - Zebrafish - Brachydanio rerio - species - http://fishbase.org.cn/images/species/Darer_m0.jpg - - - - - - - 7868 - CALMI - Callorhynchus milii - Australian ghost shark - Australian ghost shark - species - http://www.tudiscovery.com/tiburones/que_es/popup_que/asset/07914907646434433_elephant_shark_380x290.jpg - - - - - - 7757 - PETMA - Petromyzon marinus - Sea lamprey - species - http://www.uk-fish.info/pics/sealampray01.jpg - - - - - Urochordata - - 7712 - Urochordata - subphylum - - - - 7718 - Ciona - genus - - - - 7719 - CIOIN - Ciona intestinalis - Transparent sea squirt - Ascidia intestinalis - species - http://adl.brs.gov.au/marinepests/images/Ciona_intestinalis2.jpg - - - - - 51511 - CIOSA - Ciona savignyi - Pacific transparent sea squirt - species - http://www.pnwscuba.com/invasives/photos/ciona4.jpg - - - - - - 34765 - OIKDI - Oikopleura dioica - Tunicate - species - http://jellieszone.com/images/oikopleura.jpg - - - - - - - 7739 - BRAFL - Branchiostoma floridae - Florida lancelet - Amphioxus - species - http://www.nicerweb.com/sketches/video/PBS-ShapeOfLife/4.8_BonesBrawnBrains/Branchiostoma_floridae.jpg - - - - - Hemichordata & Echinodermata - - - 10224 - SACKO - Saccoglossus kowalevskii - Agassiz, 1873 - Acorn worm - species - http://faculty.washington.edu/bjswalla/Hemichordata/Enteropneusta/SkowAK.jpg - - - - - 7668 - STRPU - Strongylocentrotus purpuratus - Purple sea urchin - species - http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Strongylocentrotus_purpuratus_1.jpg/724px-Strongylocentrotus_purpuratus_1.jpg - - - - - - - 33317 - Protostomia - - - - 1206794 - Ecdysozoa - - - The evolution of the Ecdysozoa - - - - 88770 - Panarthropoda - - - Onychophora & Arthropoda - - MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda - - - - 6656 - Arthropoda - phylum - - - A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata - - - - 197563 - Mandibulata - - - Arthropod fossil data increase congruence of morphological and molecular phylogenies - - - - - - 197562 - Pancrustacea - - - - 6960 - Hexapoda - superclass - - - - 50557 - Insecta - true insects - class - - - - 33340 - Neoptera - subclass - - - - 33392 - Endopterygota - infraclass - - - Hymenoptera & Lepidoptera & Diptera - - Lepidoptera & Diptera - - - 7147 - Diptera - order - - - - 7215 - Drosophila - fruit flies - genus - - - The 19 Genomes of Drosophila: A BAC Library Resource for Genus-Wide and Genome-Scale Comparative Evolutionary Research - - - - 32341 - Sophophora - subgenus - - - melanogaster & pseudoobscura subgroups - - - 32346 - melanogaster group - - - - 32351 - melanogaster subgroup - - - DROSE & DROSI & DROME & DROYA - - DROSE & DROSI & DROME - - DROSE & DROSI - - - 7238 - DROSE - Drosophila sechellia - Fruit fly - species - - - - - 7240 - DROSI - Drosophila simulans - Fruit fly - species - - - - - - 7227 - DROME - Drosophila melanogaster - Fruit fly - species - http://www.snv.jussieu.fr/bmedia/ATP/images/dro-mal1.jpg - - - - - - 7245 - DROYA - Drosophila yakuba - Fruit fly - species - - - - - - 7220 - DROER - Drosophila erecta - Fruit fly - species - - - - - - 7217 - DROAN - Drosophila ananassae - Fruit fly - species - - - - - - 32358 - pseudoobscura subgroup - - - - 7234 - DROPE - Drosophila persimilis - Fruit fly - species - - - - - 46245 - DROPS - Drosophila pseudoobscura pseudoobscura - Fruit fly - subspecies - http://www.naylorgallery.com/wp-content/uploads/fly4stack01small.jpg - - - - - - - 7260 - DROWI - Drosophila willistoni - Fruit fly - species - - - - - Drosophila subgenus & Hawaiian Drosophila - - Drosophila subgenus - - - 7230 - DROMO - Drosophila mojavensis - Fruit fly - species - - - - - 7244 - DROVI - Drosophila virilis - Fruit fly - species - - - - - - 7222 - DROGR - Drosophila grimshawi - Fruit fly - Idiomyia grimshawi - species - http://www.pacificislandbooks.com/fruitf~1.jpg - - - - - - - 7157 - Culicidae - mosquitos - family - - - - 7159 - AEDAE - Aedes aegypti - Yellowfever mosquito - Culex aegypti - species - http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Aedes_aegypti_biting_human.jpg/757px-Aedes_aegypti_biting_human.jpg - - - - - 7165 - ANOGA - Anopheles gambiae - African malaria mosquito - species - http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg - - - - - 7175 - CULPI - Culex pipiens - House mosquito - species - http://upload.wikimedia.org/wikipedia/commons/3/35/Culex_pipiens_2007-1.jpg - - - - - - - 104431 - Obtectomera - - - - 7091 - BOMMO - Bombyx mori - Silk moth - species - http://lepidoptera.butterflyhouse.com.au/bomb/mori5.jpg - - - - - 13037 - DANPL - Danaus plexippus - Monarch butterfly - species - http://bugguide.net/images/cache/7QFRQQYRJKQ0X0YQM0Z02000U0ORKQR090H07QBRFKNRQQH0P0YRE0YRZQARLQWR70JQG09RYKDQJKCQFKFQJKTQI0.jpg - http://bugguide.net/images/raw/7RTZXR3Z6RRHKZHH8RVL8RRHMZKHERKHQZLHGRLHPR1LERQH4RCZYL1LGRHH7ZZHER1LGRSH7R6L.jpg - - - - - - - 7400 - Apocrita - wasps, ants and bees - - - - 7434 - Aculeata - suborder - - - - 36668 - Formicidae - ants - family - - - - 143999 - Attini - tribe - - - - 12957 - ATTCE - Atta cephalotes - Linnaeus, 1758 - Leafcutter ant - species - http://upload.wikimedia.org/wikipedia/commons/4/4e/Leaf-cutting_ant.jpg - - - - - 103372 - ACREC - Acromyrmex echinatior - Forel, 1899 - Panamanian leafcutter ant - Acromyrmex octospinosus echinatior - species - http://hymenopteragenome.org/acromyrmex/sites/hymenopteragenome.org.acromyrmex/files/Acromyrmex_echinatior2.jpg - - - - - - 104421 - CAMFO - Camponotus floridanus - Buckley, 1866 - Florida carpenter ant - species - http://bugguide.net/images/cache/5RLH6RRHXRALZZ9LZZ6L3LBLXZBL2RFZHZ9L7ZKH4RDZ3L3Z2RZHKZCLMZKH4R0H6R3Z6RSHMZBL5RRH5ROLKZELLZ.jpg - - - - - - 7460 - APIME - Apis mellifera - Honeybee - species - http://www.floridanature.org/photos/Apis_mellifera_6b_&_Trifolium_sp.,_TBP,_Tallahassee,_20030323.jpg - - - - - - 7425 - NASVI - Nasonia vitripennis - Parasitic wasp - species - http://www.freshpond.org/nasonia.jpg - - - - - - - 7070 - TRICA - Tribolium castaneum - Red flour beetle - species - http://upload.wikimedia.org/wikipedia/commons/d/da/Tribolium_castaneum.jpg - - - - - - 33342 - Paraneoptera - infraclass - - - - 7524 - Hemiptera - order - - - - 7029 - ACYPI - Acyrthosiphon pisum - Pea aphid - species - http://www.agroatlas.ru/content/pests/Acyrthosiphon_pisum/Acyrthosiphon_pisum.jpg - - - - - 13249 - RHOPR - Rhodnius prolixus - Triatomid bug - species - http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg - - - - - - 121224 - PEDHC - Pediculus humanus subsp. corporis - Body louse - subspecies - http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Body_lice.jpg/436px-Body_lice.jpg - - - - - - - 568273 - Machilis germanica - species - http://www.naturefg.com/images/c-animals/machilis.jpg - - - - - - 383857 - Campodea fragilis - species - http://images.wikia.com/insect/images/3/3c/Campodea_fragilis.jpg - - - - - - 6657 - Crustacea - subphylum - - - - 6658 - Branchiopoda - class - - - - 6661 - ARTSF - Artemia franciscana - Brine shrimp - Artemia sanfranciscana - species - http://www.aslo.org/photopost/data/518/medium/8Brine_shrimp.jpg - - - - - 6669 - DAPPU - Daphnia pulex - Water flea - species - http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg - - - - - - 6706 - HOMAM - Homarus americanus - American lobster - http://upload.wikimedia.org/wikipedia/commons/5/5e/Lobster.jpg - - - - - - - 61985 - Myriapoda - subphylum - - - - 7553 - Diplopoda - millipedes - class - - - - 118561 - Helminthomorpha - subclass - - - - 364406 - ANTGC - Antrokoreana gracilipes - Troglobite millipede - species - - - - - 174156 - NARAN - Narceus annularis - Millipede - species - http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg - - - - - - 52428 - Polyxenus lagurus - bristly millipede - species - http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg - - - - - - 7540 - Chilopoda - centipedes - class - - - - 29022 - SCUCO - Scutigera coleoptrata - House centipede - species - http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG - - - - - 126957 - STRMM - Strigamia maritima - European centipede - Geophilus maritimus - species - http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg - - - - - - - - 6843 - Chelicerata - subphylum - - - A 454 sequencing approach for large scale phylogenomic analysis of the common emperor scorpion (Pandinus imperator) - - - - - - - - - Arachnida & Merostomata - - Sea spider - - - - 6854 - Arachnida - class - - - - 6933 - Acari - mites & ticks - subclass - - - - 6945 - IXOSC - Ixodes scapularis - Black-legged tick - Deer tick - species - http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg - - - - - 32264 - TETUR - Tetranychus urticae - Two-spotted spider mite - species - http://upload.wikimedia.org/wikipedia/commons/thumb/c/c5/Tetranychus-urticae.jpg/472px-Tetranychus-urticae.jpg - - - - - - 34649 - MESMA - Mesobuthus martensii - Karsch, 1879 - Manchurian scorpion - Buthus martensi - Buthus martensii - species - http://www.ntnu.no/ub/scorpion-files/m_martensii1.jpg - - - - - - 6850 - LIMPO - Limulus polyphemus - Atlantic horseshoe crab - species - http://www.biopix.eu/photosmedium/Limulus%20polyphemus%2000008.JPG - - - - - - 258330 - Ammothea hilgendorfi - species - http://nathistoc.bio.uci.edu/Pycnogonida/DSCF0073b.jpg - - - - - - - 488523 - Euperipatoides kanangrensis - Reid, 1996 - species - http://content60.eol.org/content/2012/04/05/01/26600_580_360.jpg - http://upload.wikimedia.org/wikipedia/commons/6/67/Euperipatoides_kanangrensis_crop.jpg - - - - - - 232323 - HYPDU - Hypsibius dujardini - Water bear - Macrobiotus dujardini - species - http://content62.eol.org/content/2013/08/23/23/61018_580_360.jpg - - - - - - 6231 - Nematoda - roundworms - phylum - - - - 119089 - Chromadorea - class - - - - - nematode Clade V - - - 6237 - Caenorhabditis - genus - - - Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss - - - CAEBR & CAERE & CAEBE & CAEEL - - CAEBR & CAERE & CAEBE - - CAEBR & CAERE - - - 6238 - CAEBR - Caenorhabditis briggsae - species - http://www.life.umd.edu/biology/haag/briggsae_herm.jpg - - - - - 31234 - CAERE - Caenorhabditis remanei - Caenorhabditis vulgaris - species - http://lemur.amu.edu.pl/share/php/mirnest_1.0/species_images/Caenorhabditis_remanei.jpg - - - - - - 135651 - CAEBE - Caenorhabditis brenneri - Nematode worm - Caenorhabditis CB5161 - species - - - - - - 6239 - CAEEL - Caenorhabditis elegans - species - http://homepages.ed.ac.uk/mbx/C_elegans/N2_picture.gif - - - - - - 281687 - CAEJA - Caenorhabditis japonica - species - - - - - - 54126 - PRIPA - Pristionchus pacificus - Parasitic nematode - species - http://smithlabdb.usc.edu/images/Pristionchus_pacificus.jpg - - - - - - 6296 - Onchocercidae - family - - - - 6279 - BRUMA - Brugia malayi - Filarial nematode worm - species - http://upload.wikimedia.org/wikipedia/commons/4/4a/Brugia_malayi.JPG - - - - - 6293 - WUCBA - Wuchereria bancrofti - species - http://upload.wikimedia.org/wikipedia/commons/a/a9/Wuchereria_bancrofti_1_DPDX.JPG - - - - - - - 6334 - TRISP - Trichinella spiralis - Trichina worm - species - http://upload.wikimedia.org/wikipedia/commons/e/e8/Trichinella_larv1_DPDx.JPG - - - - - - - 1206795 - Lophotrochozoa - - - Annelida & Mollusca - - - 6447 - Mollusca - phylum - - - - 6448 - Gastropoda - class - - - - 6500 - APLCA - Aplysia californica - California sea hare - species - http://upload.wikimedia.org/wikipedia/commons/e/ef/Aplysia_californica.jpg - - - - - 225164 - LOTGI - Lottia gigantea - Owl limpet - species - http://nathistoc.bio.uci.edu/Molluscs/OwlLimpet1.jpg - - - - - - 6545 - Pteriomorphia - Pteriomorpha - subclass - - - - 29159 - CRAGI - Crassostrea gigas - Thunberg, 1793 - Pacific oyster - Crassotrea gigas - Crassostrea angulata - Ostrea gigas - species - http://www.marlin.ac.uk/imgs/o_cragig.jpg - - - - - 50426 - PINFU - Pinctada fucata - Pearl oyster - species - http://www.elrincondelmalacologo.com/Web%20fotos%20marinos%20no%20gasteropodos/Fotos%20coleccion/Pteriidae/Pinctada%20fucata.jpg - - - - - - - 6340 - Annelida - phylum - - - - 283909 - CTEXX - Capitella teleta - Blake, Grassle & Eckelbarger, 2009 - Capitella sp. I - species - http://genome.jgi-psf.org/Capca1/capitella.jpg - - - - - 6412 - HELRO - Helobdella robusta - Californian leech - species - http://genome.jgi-psf.org/Helro1/Helro_leech.jpg - - - - - - - 6157 - Platyhelminthes - phylum - - - - Neodermata - - - - 6179 - Digenea - flukes - subclass - - - - 6183 - SCHMA - Schistosoma mansoni - Blood fluke - species - http://animaldiversity.ummz.umich.edu/site/resources/Grzimek_inverts/Trematoda/Schistosoma_mansoni.jpg/medium.jpg - - - - - 79923 - CLOSI - Clonorchis sinensi - Cobbold, 1875 - Chinese liver fluke - species - http://people.bethel.edu/~kisrob/VirtualBiology/Planaria/Chlonorchis_sinensis.jpg - - - - - - 6211 - ECHMU - Echinococcus multilocularis - species - http://www.stanford.edu/group/parasites/ParaSites2003/Echinococcus/images/Echino_generalinfo.jpg - - - - - - 79327 - SCHMD - Schmidtea mediterranea - Freshwater planarian flatworm - species - http://www.astrobio.net/images/galleryimages_images/Gallery_Image_8136.jpg - - - - - - - - Cnidaria - - 6073 - Cnidaria - phylum - - - - 6102 - Hexacorallia - Ceriantipatharia - Zoantharia - subclass - - - - 70779 - ACRDI - Acropora digitifera - Staghorn coral - species - http://www.botany.hawaii.edu/basch/uhnpscesu/htms/NPSAcorl/images/acropori/acrdigitif7.jpg - - - - - 45351 - NEMVE - Nematostella vectensis - Starlet sea anemone - species - http://genome.jgi-psf.org/Nemve1/Nematostellapolyp.jpg - - - - - - 6085 - HMAXX - Hydra magnipapillata - Ito, 1947 - species - http://www.ncbi.nlm.nih.gov/UniGene/IMG/6085.gif - - - - - - - 10228 - TRIAD - Trichoplax adhaerens - Trichoplax reptans - species - http://genome.jgi-psf.org/Triad1/placozoan_signorovitch.jpg - - - - - - - - 27923 - MNELE - Mnemiopsis leidyi - A. gassiz, 1865 - Sea walnut - Warty comb jellyfish - species - http://images.marinespecies.org/resized/12797_mnemiopsis-leidyi.jpg - http://i.livescience.com/images/i/000/014/544/original/mnemiopsis-leidyi-jellyfish-101014-02.jpg - - - - - 400682 - AMPQE - Amphimedon queenslandica - Hooper & Van Soest, 2006 - Sponge - Reniera sp. JGI-2005 - species - http://images.marinespecies.org/resized/46694_amphimedon-queenslandica.jpg - - - - - - 81524 - Codonosigidae - family - - - - 81824 - MONBE - Monosiga brevicollis - Choanoflagellate - species - http://genome.jgi-psf.org/Monbr1/Monosiga_1.jpg - - - - - 946362 - SALS5 - Salpingoeca rosetta - Proterospongia sp. ATCC 50818 - Salpingoeca sp. ATCC 50818 - Proterospongia sp. (strain ATCC 50818 / BSB-021) - species - http://cfb.unh.edu/phycokey/Choices/Amoebae_Flagellates_Ciliates/Choanoflagellates/SALPINGOECA/salpingoeca_02_300x240_Kalle%20Olli_botany.ut.ee.jpg - - - - - - Ichthyophonida & Filasterea - - - 198625 - Ichthyophonida - order - - - - 4881 - AMOPA - Amoebidium parasiticum - species - http://www.nhm.ku.edu/~fungi/Ilustgenera/amoebi.jpg - - - - - 72019 - SARXX - Sphaeroforma arctica - species - http://www.sciencedirect.com/cache/MiamiImageURL/1-s2.0-S0168952507000236-gr2.jpg - - - - - - Filasterea - - - - - - - - 595528 - CAPO3 - Capsaspora owczarzaki (strain ATCC 30864) - http://www.berfrois.com/wp-content/uploads/2011/03/Capsaspora_owczarzaki.jpg - - - - - 134558 - Ministeria vibrans - species - http://ars.els-cdn.com/content/image/1-s2.0-S0959437X03001382-gr2.jpg - - - - - - - - Holomycota - Nucletmycea - - - Phylogenomic analyses predict sistergroup relationship of nucleariids and Fungi and paraphyly of zygomycetes with significant support - - - - 4751 - Fungi - kingdom - - - Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi - - - Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota & Chytridiomycota & Neocallimastigomycota - - Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota & Chytridiomycota - - Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota - - Dikarya & Mucoromycotina & Kickxellomycotina - - Dikarya & Mucoromycotina - - - 451864 - Dikarya - subkingdom - - - - - - - - 4890 - Ascomycota - phylum - - - Pezizomycotina & Saccharomycetales - - - 147538 - Pezizomycotina - Euascomycota - subphylum - - - A five-gene phylogeny of Pezizomycotina - - - - - - 716546 - Leotiomyceta - - - Sordariomyceta & Dothideomycetes & Trichocomaceae & Lecanoromycetes - - Sordariomyceta & Dothideomycetes & Lecanoromycetes - - Sordariomyceta & Lecanoromycetes - - - 715989 - Sordariomyceta - - - - 147550 - Sordariomycetes - class - - - Magnaporthales & Hypocreales - - - 5125 - Hypocreales - order - - - - 398408 - AALXX - Acremonium alcalophilum - species - http://genome.jgi-psf.org/public/Acral1_c3a/Acral1.jpg - - - - - 229533 - GIBZE - Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) - Wheat head blight fungus - Fusarium graminearum - Gibberella zeae PH-1 - strain - http://www.apsnet.org/publications/apsnetfeatures/PublishingImages/1999%20Features/Fusarium02sm.jpg - - - - - 413071 - HYPVG - Hypocrea virens (strain Gv29-8 / FGSC 10586) - Gliocladium virens - Trichoderma virens - Gliocladium flavofuscum - Trichoderma virens Gv29-8 - Gliocladium virens - strain - http://www.ars.usda.gov/images/docs/10920_11114/Stroma1.jpg - - - - - - 148305 - MAGGR - Magnaporthe grisea - Rice blast fungus - Pyricularia grisea - species - http://www.forestryimages.org/images/768x512/5369002.jpg - - - - - - 5139 - Sordariales - order - - - - 35718 - Chaetomiaceae - family - - - - 35719 - Thielavia - genus - - - - 573729 - THIHA - Thielavia heterothallica (strain ATCC 42464 / BCRC 31852 / DSM 1799) - (Apinis) Oorschot 1977 - Sporotrichum thermophilum - Myceliophthora thermophila - species - http://genome.jgi-psf.org/public/Spoth2/Spoth0.jpg - - - - - 578455 - THITE - Thielavia terrestris (strain ATCC 38088 / NRRL 8126) - Acremonium alabamense - Thielavia terrestris NRRL 8126 - http://genome.jgi-psf.org/public/Thite2/Thite1.jpg - - - - - - 306901 - CHAGB - Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) - Kunze 1817 - Soil fungus - strain - - - - - - 367110 - NEUCR - Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) - strain - - - - - - - 147548 - Leotiomycetes - class - - - - 28983 - Sclerotiniaceae - family - - - - 999810 - BOTF4 - Botryotinia fuckeliana (strain T4) - Noble rot fungus - Botrytis cinerea - strain - - - - - 665079 - SCLS1 - Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) - White mold - Whetzelinia sclerotiorum - strain - - - - - - 78148 - Oidiodendron maius - species - - - - - - - 388435 - Lecanoromycetidae - subclass - - - - 27339 - Cladonia grayi - Cladonia grayi Merr - species - http://upload.wikimedia.org/wikipedia/commons/b/b6/Cladonia_grayi-11.jpg - - - - - 107463 - Xanthoria parietina - species - http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Xanthoria_parietina_%2806_03_31%29.jpg/800px-Xanthoria_parietina_%2806_03_31%29.jpg - - - - - - - 147541 - Dothideomycetes - bitunicate ascomycetes - class - - - A class-wide phylogenetic assessment of Dothideomycetes - - - - 451867 - Dothideomycetidae - subclass - - - A multigene phylogeny of the Dothideomycetes using four nuclear loci - - - - - - - - 134362 - Capnodiales - order - - - - 41254 - Mycosphaerella - genus - - - - 83344 - PFIXX - Pseudocercospora fijiensis - Mycosphaerella fijiensis - species - - - - - 336722 - MYCGM - Mycosphaerella graminicola (strain CBS 115943 / IPO323) - Speckled leaf blotch fungus - Zymoseptoria tritici IPO323 - Mycosphaerella graminicola IPO323 - Septoria tritici - strain - - - - - 64363 - MYCPJ - Mycosphaerella pini - Red band needle blight disease fungus - Dothistroma septosporum - Dothistroma pini - species - - - - - 692275 - MPSXX - Mycosphaerella populorum SO2202 - Septoria musiva SO2202 - http://genome.jgi-psf.org/public/Sepmu1/Septoria-musiva-colony-abundantly-sporulating-2.jpg - - - - - - 430998 - BCOXX - Baudoinia compniacensis - Angels' Share fungus - Torula compniacensis - species - http://www.botanicalgarden.ubc.ca/potd/images/2011/baudoinia-compniacensis2.jpg - - - - - - 5580 - AURPU - Aureobasidium pullulans - Black yeast - Pullularia pullulans - species - - - - 178873 - APPXX - Aureobasidium pullulans var. pullulans - varietas - - - - - 46634 - APMXX - Aureobasidium pullulans var. melanogenum - varietas - http://genome.jgi-psf.org/public/Aurpu_var_mel1/Aurpu_var_mel1_P1010309ApM+(2).JPG - - - - - 1042127 - APSXX - Aureobasidium pullulans var. subglaciale - Aureobasidium pullulans var. nov. PZ-2008 - varietas - - - - - - - 715340 - Pleosporineae - suborder - - - - 28556 - Pleosporaceae - family - - - Cochliobolus & Setosphaeria - - - 45130 - COCSA - Cochliobolus sativus - Bipolaris sorokiniana - species - http://www.plantmanagementnetwork.org/pub/php/diagnosticguide/2003/rootrot/image/mathre6sm.jpg - - - - - 93612 - SETTU - Setosphaeria turcica - (Luttr.) K.J. Leonard & Suggs, (1974) - Northern corn leaf blight disease fungus - Exserohilum turcicum - Helminthosporium turcicum - species - - - - - - 426418 - PYRTR - Pyrenophora tritici-repentis (strain Pt-1C-BFP) - Wheat tan spot fungus - Drechslera tritici-repentis - strain - - - - - - 321614 - PHANO - Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) - Glume blotch fungus - Septoria nodorum - strain - - - - - - - - 28568 - Trichocomaceae - family - - - - 5052 - Aspergillus - genus - - - - 332952 - ASPFN - Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) - Aspergillus flavus NRRL3357 - strain - http://www.jhunewsletter.com/wp-content/uploads/2012/11/b8fungi.jpeg - - - - - 425011 - ASPNC - Aspergillus niger (strain CBS 513.88 / FGSC A1513) - Aspergillus niger CBS 513.88 - strain - http://www.vetmed.wisc.edu/students/vetmycology/15.jpg - - - - - 344612 - ASPCL - Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) - Aspergillus clavatus NRRL 1 - - - - - Neosartorya & Emericella - - - 227321 - EMENI - Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) - Vuill. 1927 - Aspergillus nidulans - strain - - - - - 331117 - NEOFI - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) - Aspergillus fischerianus - strain - - - - - - - - 33183 - Onygenales - order - - - The Ajellomycetaceae, a new family of vertebrate-associated Onygenales - - - - - mitosporic Onygenales & Onygenaceae - - - 246410 - COCIM - Coccidioides immitis (strain RS) - Valley fever fungus - Coccidioides immitis RS - - - - - 336963 - UNCRE - Uncinocarpus reesii (strain UAMH 1704) - strain - - - - - - 447093 - AJECG - Ajellomyces capsulata (strain G186AR / H82 / ATCC MYA-2454 / RMSCC 2432) - Darling's disease fungus - Histoplasma capsulatum - - - - - - - 656061 - TUBMM - Tuber melanosporum (strain Mel28) - Perigord black truffle - Tuber melanosporum Mel28 - strain - http://www.trufamania.com/trufas/Tuber%20melanosporum02.jpg - - - - - - 4892 - Saccharomycetales - budding yeasts - order - - - A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis - - - - - mitosporic Saccharomycetales & Debaryomycetaceae & Saccharomycetaceae - - - 4893 - Saccharomycetaceae - family - - - Naumovozyma & Saccharomyces - - - 1064592 - NAUCC - Naumovozyma castellii (strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRRL Y-12630) - Yeast - Saccharomyces castellii - strain - - - - - 559292 - YEAST - Saccharomyces cerevisiae (strain ATCC 204508 / S288c) - Baker's yeast - strain - - - - - Eremothecium & Kluyveromyces - - - 284590 - KLULA - Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) - Yeast - Candida sphaerica - Kluyveromyces lactis NRRL Y-1140 - - - - - 284811 - ASHGO - Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) - Yeast - Eremothecium gossypii - - - - - - Debaryomyces & Candida - - - 5475 - Candida - Torulopsis - genus - - - - 237561 - CANAL - Candida albicans (strain SC5314 / ATCC MYA-2876) - Yeast - strain - - - - - 294747 - CANTT - Candida tropicalis (strain ATCC MYA-3404 / T1) - Yeast - strain - - - - - - 284592 - DEBHA - Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) - Yeast - Torulaspora hansenii - Debaryomyces hansenii CBS767 - - - - - - - 284591 - YARLI - Yarrowia lipolytica (strain CLIB 122 / E 150) - Yeast - Candida lipolytica - strain - - - - - - - 451866 - Taphrinomycotina - subphylum - - - Pneumocystidomycetes & Schizosaccharomycetes - - - 4895 - Schizosaccharomyces - genus - - - - 402676 - SCHJY - Schizosaccharomyces japonicus (strain yFS275 / FY16936) - Fission yeast - strain - - - - - 4899 - SCHOT - Schizosaccharomyces octosporus - Fission yeast - species - http://www.dipbot.unict.it/sistematica/Immagini/12002.JPG - - - - - 284812 - SCHPO - Schizosaccharomyces pombe (strain 972 / ATCC 24843) - Fission yeast - strain - - - - - - 4754 - PNECA - Pneumocystis carinii - species - - - - - - 5606 - Saitoella complicata - species - - - - - - - 5204 - Basidiomycota - phylum - - - Agaricomycotina & Ustilaginomycotina & Pucciniomycotina - - Agaricomycotina & Ustilaginomycotina - - - 5302 - Agaricomycotina - - - - 155619 - Homobasidiomycetes - class - - - Evolution of complex fruiting–body morphologies in homobasidiomycetes - - - Agaricomycetidae & Gloeophyllum & Aphyllophorales - - Agaricomycetidae & Gloeophyllum - - - 452333 - Agaricomycetidae - subclass - - - Agaricales & Boletales - - - 5338 - Agaricales - order - - - Agaricus & Coprinopsis & Laccaria & Pleurotus - - Agaricus & Coprinopsis & Laccaria - - Agaricus & Coprinopsis - - - 597362 - AGABU - Agaricus bisporus var. burnettii (strain JB137-S8 / ATCC MYA-4627 / FGSC 10392) - White button mushroom - Agaricus bisporus var. burnettii JB137-S8 - http://www.mykoweb.com/CAF/photos/Agaricus_bisporus(fs-03).jpg - - - - - 5346 - COPC7 - Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) - Inky cap fungus - Hormographiella aspergillata - strain - http://upload.wikimedia.org/wikipedia/commons/e/e9/Coprinopsis.cinerea.-.lindsey.jpg - - - - - - 486041 - LACBS - Laccaria bicolor - Bicoloured deceiver - Laccaria laccata var. bicolor - Laccaria bicolor S238N-H82 - strain - http://botit.botany.wisc.edu/toms_fungi/images/L_bicolor_NM.JPG - - - - - - 206324 - Gymnopus luxurians - species - http://www.mushroomexpert.com/images/kuo3/gymnopus_luxurians_02.jpg - - - - - - 5322 - PLEOS - Pleurotus ostreatus - Oyster mushroom - White-rot fungus - species - http://botit.botany.wisc.edu/toms_fungi/images/post1.jpg - - - - - - 68889 - Boletales - Melanogastrales - Sclerodermatales - order - - - - 227334 - Coniophorineae - suborder - - - - 80637 - CPUXX - Coniophora puteana - Schum. ex Fries - cellar fungus - species - http://genome.jgi-psf.org/public/Conpu1/P1240066_dp.jpg - - - - - 578457 - SERL9 - Serpula lacrymans var. lacrymans (strain S7.9) - Dry rot fungus - http://www.anbg.gov.au/fungi/images/0160.jpg - - - - - - 388859 - Hydnomerulius pinastri - Spiny dry rot fungus - species - http://genome.jgi.doe.gov/public/Hydpi1/Hydnomerulius_pinastri.jpg - - - - - - - 202697 - JARXX - Jaapia argillacea - species - http://mycor.nancy.inra.fr/blogGenomes/wp-content/uploads/2012/08/IMG_21261.jpg - - - - - - 104355 - GLOTR - Gloeophyllum trabeum - Brown rot fungus - species - http://www.commanster.eu/commanster/Mushrooms/Basidio/SpBasidio/Gloeophyllum.trabeum.jpg - - - - - - 5303 - Aphyllophorales - Gäum. (1926) - Shelf Fungi - Polyporales - order - - - - 83233 - Coriolaceae - family - - - The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes) - - - - - - - Postia & Fomitopsis & Wolfiporia & Trametes - - Antrodia clade - - Antrodia clade - - - - 40483 - FPIXX - Fomitopsis pinicola - (Swartz) P. Karsten - Red banded polypore - Fomes pinicola - Boletus pinicola - species - http://www.mykoweb.com/CAF/photos/Fomitopsis_pinicola(mgw-02).jpg - - - - - 104341 - PPLXX - Postia placenta - Rhodonia placenta - species - http://www.commanster.eu/commanster/Mushrooms/Polypore/SuPolypore/Postia.placenta.jpg - - - - - core polyporoid clade - - core polyporoid clade - - - - 5325 - TRAVE - Trametes versicolor - (L.) Lloyd 1921 - White-rot fungus - Coriolus versicolor - Bjerkandera versicolor - species - http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0304/0521.jpeg - - - - - 742152 - WOLCO - Wolfiporia cocos (strain MD-104) - Brown rot fungus - Wolfiporia cocos MD-104 SS10 - http://genome.jgi-psf.org/public/Wolco1/W_cocos_CA-b1.jpg - - - - - - - 42742 - CERSU - Ceriporiopsis subvermispora - species - - - - - - 732165 - DICSQ - Dichomitus squalens (strain LYAD-421) - Western red white-rot fungus - Dichomitus squalens LYAD-421 SS1 - http://www.fs.fed.us/r3/resources/health/field-guide/images/large/sds-f199-large.jpg - - - - - - - 13563 - HETAN - Heterobasidion annosum - Root rot fungus - species - - - - - - 5215 - Tremellaceae - family - - - - 5207 - CRYNE - Cryptococcus neoformans - Filobasidiella neoformans - species - - - - - 1029985 - TREME - Tremella mesenterica - Pers. 1800 - Jelly fungus - Yellow Brain - Tremella lutescens - species - - - - - - - 452284 - Ustilaginomycotina - subphylum - - - - 425265 - MALGO - Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) - Dandruff-associated fungus - - - - - 237631 - USTMA - Ustilago maydis (strain 521 / FGSC 9021) - Corn smut fungus - species - - - - - - - 29000 - Pucciniomycotina - subphylum - - - - 5258 - Pucciniales - rusts - order - - - - 747676 - MELLP - Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7) - Kleb. 1902 - Poplar leaf rust fungus - Melampsora larici-populina 98AG31 - Melampsora laricis-populina 98AG31 - strain - - - - - 5297 - PUCGR - Puccinia graminis - Pers. 1794 - Black stem rust fungus - species - - - - - - 89013 - mitosporic Sporidiobolales - - - - 29898 - RHOGR - Rhodotorula graminis - Yeast - species - - - - - 40563 - SPORO - Sporobolomyces roseus - Kluyver & C. B. Niel 1924 - species - - - - - - - - 671144 - WALSC - Wallemia sebi (strain ATCC MYA-4683 / CBS 633.66) - strain - - - - - - - 451507 - Mucoromycotina - subphylum - - - - 34489 - Mucoraceae - family - - - - 36080 - MUCCI - Mucor circinelloides - Mucor griseo-roseus - species - - - - - 4837 - PHYBL - Phycomyces blakesleeanus - species - - - - - 64495 - RHIOR - Rhizopus oryzae - Mucormycosis agent - Rhizopus delemar - Rhizopus arrhizus var. delemar - species - - - - - - 1069443 - MVNXX - Mortierella verticillata NRRL 6337 - species - http://www.ual.es/GruposInv/myco-ual/galeria17/mortierella.jpg - http://www.diark.org/img/species_pict/Mortierella_verticillata - - - - - - - 61392 - CREXX - Coemansia reversa - species - http://genome.jgi.doe.gov/public/Coere1/Coemansia.jpg - - - - - - 28583 - ALLMA - Allomyces macrogynus - species - - - - - - 4761 - Chytridiomycota - chytrids - Mastigomycotina - phylum - - - - 451435 - Chytridiomycetes - class - - - - 684364 - BATDJ - Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) - Frog chytrid fungus - strain - - - - - 109760 - SPIPN - Spizellomyces punctatus - species - - - - - - 1123529 - GONPR - Gonapodya prolifera - A. Fisch. 1892 - Aquatic fungus - species - http://genome.jgi-psf.org/public/Ganpr1/Picture5.jpg - - - - - - - 73868 - PIRSE - Piromyces sp. (strain E2) - species - http://www.bsu.edu/classes/ruch/msa/barr/4-17.jpg - - - - - - 6029 - Microsporidia - phylum - - - Disseminated Infection Caused by Novel Species of Microsporidium, Thailand - - - - 6032 - Apansporoblastina - suborder - - - - 6033 - Encephalitozoon - genus - - - - 284813 - ENCCU - Encephalitozoon cuniculi (strain GB-M1) - Microsporidian parasite - strain - http://www.nature.com/modpathol/journal/v15/n5/images/3880566f7.jpg - - - - - 907965 - ENCHA - Encephalitozoon hellem (strain ATCC 50504) - Microsporidian parasite - strain - http://ruby.fgcu.edu/courses/davidb/50249/web/Encephalitozoonhellem91.jpg - - - - - Nosematidae & Enterocytozoonidae - - - 993615 - VITCO - Vittaforma corneae (strain ATCC 50505) - Microsporidian parasite - Nosema corneum - - - - - 481877 - ENTBH - Enterocytozoon bieneusi (strain H348) - Microsporidian parasite - http://www.biolib.cz/IMG/GAL/17310.jpg - - - - - - - 35232 - Pleistophoridae - family - - - - 72359 - TRAHO - Trachipleistophora hominis - Microsporidian parasite - species - - - - - 948595 - VAVCU - Vavraia culicis (isolate floridensis) - Microsporidian parasite - - - - - - 1003232 - EDHAE - Edhazardia aedis (strain USNM 41457) - Microsporidian parasite - http://wwx.inhs.illinois.edu/files/6813/4021/9153/4Edhazardia_aedis.jpg - - - - - - - 1001604 - Nucleariidae and Fonticula group - - - Phylogeny of the �Forgotten� Cellular Slime Mold, Fonticula alba, Reveals a Key Evolutionary Branch within Opisthokonta - - - - 691883 - FALXX - Fonticula alba - Worley, Raper & Hohl. 1979 - species - http://mbe.oxfordjournals.org/content/26/12/2699/F2.medium.gif - - - - - 154970 - Nuclearia simplex - species - - - - - - - - 554915 - Amoebozoa - - - - 33083 - Dictyosteliida - dictyostelid cellular slime molds - order - - - - 5782 - Dictyostelium - genus - - - An expanded phylogeny of social amoebas (Dictyostelia) shows increasing diversity and new morphological patterns - - - - - - - group 4 - - - 44689 - DICDI - Dictyostelium discoideum - Slime mold - species - http://www.tins.ne.jp/~tsukubagec/csm.GIF - - - - - 5786 - DICPU - Dictyostelium purpureum - Slime mold - species - - - - - - 1054147 - DICFS - Dictyostelium fasciculatum (strain SH3) - Slime mold - strain - - - - - - 13642 - POLPA - Polysphondylium pallidum - Cellular slime mold - species - http://cosmos.bot.kyoto-u.ac.jp/csm/photos2/Pp8s.jpeg - - - - - - 5758 - Entamoeba - genus - - - - 5759 - ENTHI - Entamoeba histolytica - species - http://www.dpd.cdc.gov/dpdx/images/ParasiteImages/A-F/Amebiasis/E_histo/Ehistdisp_troph_wtmt2.jpg - - - - - 370354 - ENTDS - Entamoeba dispar (strain ATCC PRA-260 / SAW760) - - - - - - - Bikonta - - - - Plants+HC+SAR megagroup - - Plants+HC - - Archaeplastida - - - 33090 - Viridiplantae - green plants - kingdom - - - - 3193 - Embryophyta - - - - 58023 - Tracheophyta - vascular plants - - - - 58024 - Spermatophyta - seed plants - - - - 3398 - Magnoliophyta - flowering plants - Angiospermae - - - - 71240 - eudicotyledons - - - - 91827 - core eudicotyledons - - - - 71275 - rosids - subclass - - - fabids & malvids - - - 91835 - fabids - - - Rosales & Cucurbitales & Fabales - - Rosales & Cucurbitales - - - 3745 - Rosaceae - family - - - - 57918 - FRAVE - Fragaria vesca - Woodland strawberry - Fragaria vesca L. - European strawberry - alpine strawberry - species - http://www.boga.ruhr-uni-bochum.de/html/Fragaria.vesca.ja6.jpg - http://caliban.mpiz-koeln.mpg.de/thome/band3/tafel_092_small.jpg - - - - - 3760 - PRUPE - Prunus persica - Peach - Persica vulgaris - Amygdalus persica - species - http://www.mezhenskyjv.narod.ru/foto_sortov/dokaz.jpg - - - - - - 3659 - CUCSA - Cucumis sativus - Cucumber - species - - - - - - 3814 - Papilionoideae - subfamily - - - - 3847 - SOYBN - Glycine max - cv. Wye - Soybean - Glycine hispida - species - - - - - 3880 - MEDTR - Medicago truncatula - Barrel medic - Medicago tribuloides - species - http://crdp.ac-besancon.fr/flore/FABACEAE/photos/medicago_truncatula_30.jpg - - - - - - - 3646 - Malpighiales - order - - - - 3977 - Euphorbiaceae - family - - - - 3983 - MANES - Manihot esculenta - Tapioca - Jatropha manihot - species - http://upload.wikimedia.org/wikipedia/commons/9/99/Iwata_kenichi_cassava.jpg - - - - - 3988 - RICCO - Ricinus communis - Castor bean - Ricinus sanguineus - species - http://nmorganics.net/wp-content/uploads/2011/09/castor.jpg - - - - - - 3694 - POPTR - Populus trichocarpa - Western balsam poplar - Populus balsamifera subsp. trichocarpa - species - - - - - - - 91836 - malvids - - - Brassicales & Sapindales - - - 3699 - Brassicales - order - - - - 3700 - Brassicaceae - family - - - - 3701 - Arabidopsis - genus - - - - 59689 - ARALY - Arabidopsis lyrata - Lyre-leaved rock-cress - Arabis lyrata - species - - - - - 3702 - ARATH - Arabidopsis thaliana - Mouse-ear cress - species - - - - - - 98038 - THEHA - Thellungiella halophila - Salt cress - species - http://mplant.oxfordjournals.org/content/2/1/3/F1.large.jpg - - - - - - 3649 - CARPA - Carica papaya - Papaya - species - http://www.biopix.com/photos/jko-carica-papaya-00412.jpg - http://www.texasriviera.com/greenthumbs/papaya10.jpg - - - - - - 2706 - Citrus - genus - - - - 85681 - CCLXX - Citrus clementina - Citrus clementina hort. ex Tanaka - species - http://www.citrusgenomedb.org/sites/default/files/tripal/tripal_organism/images/Citrus_clementina.jpg - - - - - 2711 - CITSI - Citrus sinensis - Sweet orange - Citrus x sinensis - Citrus aurantium var. sinensis - species - http://www.west-crete.com/flowers/photos/citrus_sinensis-1.jpg - - - - - - - 71139 - EUCGR - Eucalyptus grandis - Flooded gum - species - http://www.calflora.net/losangelesarboretum/images/eucalyptus_grandis.jpg - - - - - - - 582304 - VITVI - Vitis vinifera - Grape - species - - - - - - 91888 - lamiids - - - - 4070 - Solanaceae - family - - - - 4107 - Solanum - genus - - - - 49274 - Lycopersicon - subgenus - - - - 4081 - SOLLC - Solanum lycopersicum - Tomato - Lycopersicon esculentum - species - http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0905/1214.jpeg - - - - - 4084 - SOLPI - Solanum pimpinellifolium - Currant tomato - Lycopersicon pimpinellifolium - species - http://upload.wikimedia.org/wikipedia/commons/b/b8/Currant_tomato.jpg - - - - - - 4113 - SOLTU - Solanum tuberosum - Potato - species - http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0508/0344.jpeg - - - - - - 4097 - TOBAC - Nicotiana tabacum - Common tobacco - species - http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0105/2073.jpeg - - - - - - 4155 - MIMGU - Mimulus guttatus - Yellow monkey flower - Yellow monkey flower - species - - - - - - - 218851 - AQUCA - Aquilegia caerulea - E.James - Rocky mountain columbine - Aquilegia coerulea - species - http://www.wildflower.org/image_archive/320x240/PCD3618/PCD3618_IMG0033.JPG - - - - - - 4447 - Liliopsida - monocots - Monocotyledoneae - class - - - - 4479 - Poaceae - grass family - Gramineae - family - - - - 147369 - Panicoideae - Link, 1827 - Centothecoideae - subfamily - - - - 147429 - Andropogoneae - Dumort., 1824 - tribe - - - - 4558 - SORBI - Sorghum bicolor - Sorghum - Sorghum vulgare - species - - - - - 4577 - MAIZE - Zea mays - Maize - species - - - - - - 147428 - Paniceae - tribe - - - - 38727 - PANVG - Panicum virgatum - switchgrass - species - http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/PanicumVirgatum.jpg/220px-PanicumVirgatum.jpg - - - - - 4555 - SETIT - Setaria italica - Foxtail millet - Panicum italicum - species - http://en.academic.ru/pictures/enwiki/83/Setaria_italica0.jpg - - - - - - - 359160 - BEP clade - - - - 4527 - Oryza - genus - - - - 4530 - ORYSA - Oryza sativa - Rice - species - - - - - 39947 - ORYSJ - Oryza sativa subsp. japonica - Rice - - - - - - 147368 - Pooideae - subfamily - - - - 15368 - BRADI - Brachypodium distachyon - Purple false brome - Trachynia distachya - species - http://upload.wikimedia.org/wikipedia/commons/0/01/Brachypodium_distachyon_Bd21-3.jpg - - - - - 112509 - HORVD - Hordeum vulgare var. distichum - Two-rowed barley - subspecies - http://www.missouriplants.com/Grasses/Hordeum_vulgare_plant.jpg - - - - - - - - 214687 - MUSAM - Musa acuminata subsp. malaccensis - (Ridl.) N.W.Simmonds - Wild banana - Musa malaccensis - subspecies - http://farm5.staticflickr.com/4009/4572831376_07ca3089d1_z.jpg - - - - - - - 3329 - PICAB - Picea abies - H.Karst - Norway spruce - Picea excelsa - species - http://pharm1.pharmazie.uni-greifswald.de/allgemei/serturn/arzpfl-b/picea_a.jpg - - - - - - 88036 - SELML - Selaginella moellendorffii - Hieron - Spikemoss - species - http://www.plantsystematics.org/users/robbin/5_22_06/upload121/Selag_moellendorffii3.JPG - - - - - - 145481 - PHYPA - Physcomitrella patens subsp. patens - Moss - subspecies - http://www.aua.gr/plantdevelopment/Photos2/01%20Physcomitrella%20patens.jpg - - - - - - 3041 - Chlorophyta - phylum - - - - 13792 - Mamiellales - order - - - - 70447 - Ostreococcus - genus - - - - 436017 - OSTLU - Ostreococcus lucimarinus (strain CCE9901) - - - - - 385169 - ORCXX - Ostreococcus sp. RCC809 - species - - - - - 70448 - OSTTA - Ostreococcus tauri - species - http://genome.jgi-psf.org/Ost9901_3/Ostta.jpg - - - - - - 38832 - Micromonas - genus - - - - 564608 - MICPC - Micromonas pusilla (strain CCMP1545) - Picoplanktonic green alga - http://www.mansfield.ohio-state.edu/~sabedon/microfla.jpg - - - - - 296587 - MICSR - Micromonas sp. (strain RCC299 / NOUM17) - Picoplanktonic green alga - Micromonas sp. RCC299 - species - - - - - - Trebouxiophyceae & Chlorophyceae - - - 75966 - Trebouxiophyceae - class - - - - 763042 - ASCXX - Asterochloris sp. Cgr/DA1pho - species - http://genome.jgi-psf.org/Astpho1/Figure_3.jpg - - - - - 554065 - CHLVA - Chlorella variabilis - Shihira & Krauss 1965 - Green alga - Chlorella sp. NC64A - Chlorella sp. Bnd1-ZK - species - http://www.sinice.cz/res/image/collection/Chlorella.jpg - - - - - 574566 - CSUXX - Coccomyxa subellipsoidea C-169 - Chlorella vulgaris C-169 - Coccomyxa sp. C-169 - species - http://genome.jgi.doe.gov/Coc_C169_1/Chlvu.jpg - - - - - - 3042 - Chlamydomonadales - order - - - - 3055 - CHLRE - Chlamydomonas reinhardtii - Chlamydomonas smithii - species - http://genome.jgi-psf.org/Chlre3/chlamy_BG.gif - - - - - 3067 - VOLCA - Volvox carteri - Green alga - species - http://genome.jgi-psf.org/Volca1/Volvox.jpg - - - - - - - - - 2763 - Rhodophyta - red algae - - - - 265316 - Cyanidiaceae - family - - - - 45157 - CYAME - Cyanidioschyzon merolae - Red alga - species - http://www.shigen.nig.ac.jp/algae_tree/CyanidiophyceaeIMG.jpg - - - - - 130081 - GALSU - Galdieria sulphuraria - Red alga - species - http://phenomena.nationalgeographic.com/files/2013/03/Alga.jpg - - - - - - 2769 - CHOCR - Chondrus crispus - Carragheen moss - Irish moss - species - http://www.seaweed.ie/_images/MG3_0485.png - - - - - - 38254 - Glaucocystophyceae - Glaucophyta - class - - - - 2762 - CYAPA - Cyanophora paradoxa - species - http://www.people.vcu.edu/~rfisher/paradoxa.jpg - - - - - 38271 - Glaucocystis nostochinearum - species - http://protist.i.hosei.ac.jp/pdb/images/Others/Glaucocystis/sp_02.jpg - - - - - - Hacrobia (Cryptophyta & Haptophyceae & Centroheliozoa) - - - 2903 - EMIHU - Emiliania huxleyi - Pontosphaera huxleyi - species - http://research.kahaku.go.jp/zoology/kaisei/hp-2/images/hapto.jpg - - - - - 55529 - GUITH - Guillardia theta - Cryptomonas phi - species - http://genome.jgi.doe.gov/public/Guith1/Gtheta_SEM.jpg - - - Multiple Gene Phylogenies Support the Monophyly of Cryptomonad and Haptophyte Host Lineages - - - - - - - - Stramenopiles & Alveolata & Rhizaria - - Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists - - - - - Stramenopiles & Alveolata - - - 33630 - Alveolata - superphylum - - - Apicomplexa & Dinophyceae - - - 5794 - Apicomplexa - phylum - - - The origins of apicomplexan sequence innovation (2009) - - - - - Aconoidasida & Coccidia - - - 422676 - Aconoidasida - Mehlhorn et al. 1980 - Hematozoa - class - - - - 5820 - Plasmodium - genus - - - - 5825 - PLACH - Plasmodium chabaudi - species - - - - - 36329 - PLAF7 - Plasmodium falciparum (isolate 3D7) - - - - - 73239 - PLAYO - Plasmodium yoelii yoelii - subspecies - - - - - 126793 - PLAVS - Plasmodium vivax (strain Salvador I) - - - - - - 5863 - Piroplasmida - Piroplasmids - order - - - Theileria - - 5873 - Theileria - genus - - - - 5874 - THEAN - Theileria annulata - species - - - - - 5875 - THEPA - Theileria parva - East coast fever infection agent - species - - - - - - 5865 - BABBO - Babesia bovis - species - http://www.perulactea.com/wp-content/uploads/2012/03/Babesia_bovis.jpg - - - - - - - 5796 - Coccidia - coccidians - subclass - - - The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees - - - - - - 5802 - EIMTE - Eimeria tenella - Coccidian parasite - species - http://www.k-state.edu/parasitology/625tutorials/FIGtenella.jpg - - - - - 5811 - TOXGO - Toxoplasma gondii - species - - - - - - - 5806 - Cryptosporidium - genus - - - - 237895 - CRYHO - Cryptosporidium hominis - species - - - - - 5807 - CRYPV - Cryptosporidium parvum - species - - - - - 353152 - CRYPI - Cryptosporidium parvum (strain Iowa II) - - - - - - - 2864 - Dinophyceae - Fritsch, 1927 - dinoflagellates - Chromophyta - Dinoflagellata - Pyrrophyta - class - - - - 2866 - CRYCO - Crypthecodinium cohnii - Dinoflagellate - species - http://www.lamolina.net/image/DHAcell.jpg - - - - - 2923 - THOHE - Thoracosphaera heimii - Dinoflagellate - species - http://planktonnet.awi.de/repository/rawdata-PlanktonNet2/viewable/fjouenne_21806a_20080123172436_small.jpg - - - - - - - 5878 - Ciliophora - ciliates - phylum - - - - 431838 - Intramacronucleata - subphylum - - - - 6020 - Oligohymenophorea - class - - - - 5888 - PARTE - Paramecium tetraurelia - species - http://research.plattsburgh.edu/ciliates/images/jdopics208.jpg - - - - - 312017 - TETTS - Tetrahymena thermophila (strain SB210) - http://upload.wikimedia.org/wikipedia/commons/thumb/0/08/Tetrahymena_thermophila.png/220px-Tetrahymena_thermophila.png - - - - - - 1172189 - OTRXX - Oxytricha trifallax - Stein, 1859 - species - http://centexnaturalist.com/foldermainmenus/sfprotists/folderprotozoans/oxytricha04.gif - - - - - - 5961 - BLEJA - Blepharisma japonicum - species - http://upload.wikimedia.org/wikipedia/commons/2/23/Mikrofoto.de-Blepharisma_japonicum_15.jpg - http://protist.i.hosei.ac.jp/PDB/PCD0473/C/016.jpg - - - - - - - 33634 - Stramenopiles - Patterson 1989, emend. Adl et al. 2005 - Chromophyta - heterokonts - Heterokontophyta - - - Labyrinthulomycetes & Ochrophyta & Oomycetes - - Ochrophyta & Oomycetes - - Seven Gene Phylogeny of Heterokonts - - - - - - Ochrophyta - - - - 2836 - Bacillariophyta - diatoms - class - - - - 33850 - Bacillariophycidae - - - - 186039 - FCYXX - Fragilariopsis cylindrus - Krieger - Nitzschia cylindrus - species - http://www.awi.de/fileadmin/user_upload/News/Press_Releases/2012/1._Quartal/000_Fragilariposis_Chloroplasten_GDieckmann_w.jpg - - - - - 2850 - PHATR - Phaeodactylum tricornutum - Bohlin - species - http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Phaeodactylum_tricornutum.png/637px-Phaeodactylum_tricornutum.png - - - - - - 35127 - Thalassiosira - genus - - - - 35128 - THAPS - Thalassiosira pseudonana - Hasle & Heimdal - Marine diatom - Cyclotella nana - species - http://www.genomenewsnetwork.org/gnn_images/sequenced_genomes/thalassiosira_pseudonana.jpg - - - - - 159749 - THAOC - Thalassiosira oceanica - Marine diatom - species - - - - - - Pelagophyceae & Phaeophyceae - - Distribution patterns and phylogeny of marine stramenopiles in the north pacific ocean - - - - - - 44056 - AURAN - Aureococcus anophagefferens - Hargraves & Sieburth - Harmful bloom alga - species - http://www.dec.ny.gov/images/fish_marine_images/alex1.jpg - - - - - 2880 - ECTSI - Ectocarpus siliculosus - Brown alga - species - http://www.research.kobe-u.ac.jp/rcis-ku-macc/j.p.folder/photo/KU-1110%20Ectocarpus%20siliculosus%20b%20x20.jpg - - - - - - - 4762 - Oomycetes - - - - 4776 - Peronosporales - order - - - - 4783 - Phytophthora - genus - - - - 4787 - PHYIN - Phytophthora infestans - (Mont.) de Bary 1876 - Potato late blight fungus - species - http://bioweb.uwlax.edu/bio203/s2007/benrud_jaco/index_files/image4901.jpg - - - - - 164328 - PHYRM - Phytophthora ramorum - Sudden oak death agent - species - http://genome.jgi-psf.org/Phyra1_1/pramorum.jpg - - - - - 67593 - PHYSO - Phytophthora sojae - Soybean stem and root rot agent - Phytophthora megasperma f. sp. glycines - species - http://www.apsnet.org/publications/imageresources/PublishingImages/2003/IW000025b.jpg - - - - - 4785 - PHYCI - Phytophthora cinnamomi - Cinnamon fungus - species - http://genome.jgi.doe.gov/public/Phyci1/Pcinnamomi_hyphae_and_chlamydospores.jpg - - - - - 4784 - PHYCP - Phytophthora capsici - species - http://upload.wikimedia.org/wikipedia/commons/2/24/Phytophthora_capsici_sporangia.jpg - - - - - - 559515 - HYAAE - Hyaloperonospora arabidopsidis (strain Emoy2) - Downy mildew agent - Peronospora arabidopsidis - http://www.nature.com/nature/journal/v470/n7332/images/470044a-f1.2.jpg - - - - - - 65071 - PYTUL - Pythium ultimum - species - http://www.plantpath.cornell.edu/labs/enelson/images/Germ_Sporangia(small).jpg - - - - - - - 33674 - Thraustochytriaceae - Thraustochytriales - family - - - - 702273 - AKEXX - Aplanochytrium kerguelense PBS07 - http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Aplanolm.jpg/120px-Aplanolm.jpg - - - - - 876976 - SAGXX - Schizochytrium aggregatum ATCC 28209 - http://genome.jgi-psf.org/public/Schag1/120124-ATCC28209-22.JPG - - - - - 87102 - ALIXX - Aurantiochytrium limacinum - Schizochytrium limacinum - species - http://upload.wikimedia.org/wikipedia/commons/3/38/Aurantiochytrium_limacinum_SR21.jpg - - - - - - - 12968 - BLAHO - Blastocystis hominis - species - - - - - - - 543769 - Rhizaria - - - - 71427 - Allogromia laticollaris - species - http://forambarcoding.unige.ch/system/pictures/424/s600/A.laticollaris1.jpg - - - - - 227086 - BIGNA - Bigelowiella natans - Pedinomonas minutissima - Chlorarachnion sp. (strain CCMP621) - Pedinomonas minutissima - species - http://genome.jgi.doe.gov/Bigna1/Bigna1.jpg - - - - - - - Excavata - - - - Kinetoplastida & Heterolobosea - - - 5653 - Kinetoplastida - kinetoplasts - order - - - - 5654 - Trypanosomatidae - family - - - - 5690 - Trypanosoma - genus - - - - 999953 - TRYB2 - Trypanosoma brucei brucei (strain 927/4 GUTat10.1) - strain - - - - - 5693 - TRYCR - Trypanosoma cruzi - species - http://upload.wikimedia.org/wikipedia/commons/thumb/0/0b/Trypanosoma_cruzi_crithidia.jpeg/220px-Trypanosoma_cruzi_crithidia.jpeg - - - - - - 5658 - Leishmania - genus - - - - 5664 - LEIMA - Leishmania major - species - - - - - 5671 - LEIIN - Leishmania infantum - species - - - - - 5660 - LEIBR - Leishmania braziliensis - species - - - - - - - 75058 - BODSA - Bodo saltans - Flagellated protozoan - species - http://protist.i.hosei.ac.jp/pdb/images/Mastigophora/Bodo/sp_1f.jpg - - - - - - 5762 - NAEGR - Naegleria gruberi - Amoeba - species - http://media.npr.org/assets/news/2010/03/05/amoeba_custom-a24a7e20b8d9f1b681cf6a25d0d046d84f238349-s3.jpg - - - - - Metamonada - - - 184922 - GIAIC - Giardia intestinalis (strain ATCC 50803 / WB clone C6) - Giardia intestinalis (strain ATCC 50803 / WB clone C6) - Giardia lamblia - species - - - - - 5722 - TRIVA - Trichomonas vaginalis - species - - - - - - - 554296 - Apusozoa - - - Planomonadida ord. nov. (Apusozoa): Ultrastructural Affinity with Micronuclearia podoventralis and Deep Divergences within Planomonas gen. nov - - - - 554453 - Planomonas micra - (Cavalier-Smith, 2008) Heiss, Walker & Simpson 2010 - Apusomonadidae sp. micra - species - - - - - 529818 - TTRXX - Thecamonas trahens - Larsen & Patterson 1990 - Amastigomonas trahens - species - http://bioinformatica.upf.edu/2011/projectes11/Cx/images/pro_t_tra.jpg - - - - - - - - 2157 - Archaea - superkingdom - - - a_62 - - a_56 - - - 28890 - Euryarchaeota - phylum - - - a_44 - - a_28 - - a_26 - - - 224756 - Methanomicrobia - class - - - a_14 - - a_12 - - - 2206 - Methanosarcinaceae - family - - - - 2207 - Methanosarcina - genus - - - a_2 - - - 2214 - METAC - Methanosarcina acetivorans - species - - - - - 269797 - METBF - Methanosarcina barkeri (strain Fusaro / DSM 804) - - - - - - 2209 - METMA - Methanosarcina mazei - Methanosarcina frisia - species - - - - - - 259564 - METBU - Methanococcoides burtonii (strain DSM 6242) - - - - - a_11 - - 2191 - Methanomicrobiales - order - - - a_9 - - - 456442 - METB6 - Methanoregula boonei (strain 6A8) - - - - - 2203 - METHU - Methanospirillum hungatei - species - - - - - - 368407 - METMJ - Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) - - - - - - - 410358 - METLZ - Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) - - - - - - 349307 - METTP - Methanosaeta thermophila (strain DSM 6194 / PT) - Methanothrix thermophila (strain DSM 6194 / PT) - - - - - - 2236 - Halobacteriaceae - family - - - a_23 - - a_19 - - - 2238 - HALMA - Haloarcula marismortui - Halobacterium marismortui - species - - - - - 2257 - NATPH - Natronomonas pharaonis - Natronobacterium pharaonis - species - - - - - a_22 - - 2239 - Halobacterium - genus - - - - 478009 - HALS3 - Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) - - - - - 2243 - HALSP - Halobacterium sp. - species - - - - - - - 362976 - HALWD - Haloquadratum walsbyi (strain DSM 16790) - - - - - - - 224325 - ARCFU - Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) - strain - - - - - a_43 - - a_41 - - - 2182 - Methanococcales - order - - - a_31 - - - 2190 - METJA - Methanocaldococcus jannaschii - Methanococcus jannaschii - species - - - - - 419665 - META3 - Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) - - - - - a_34 - - 2184 - Methanococcus - genus - - - - 39152 - METMP - Methanococcus maripaludis - Methanococcus deltae - species - - - - - 406327 - METVS - Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) - - - - - - a_40 - - 2159 - Methanobacteriaceae - family - - - a_38 - - - 420247 - METS3 - Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) - - - - - 339860 - METST - Methanosphaera stadtmanae (strain DSM 3091) - - - - - - 187420 - METTH - Methanobacterium thermoautotrophicum - Methanobacterium thermoautotrophicum - - - - - - - 2320 - METKA - Methanopyrus kandleri - species - - - - - - - 2259 - Thermococcaceae - family - - - PYRFU & THEKO & PYRAB & PYRHO - - PYRFU & THEKO - - - 2261 - PYRFU - Pyrococcus furiosus - species - - - - - 69014 - THEKO - Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) - Pyrococcus kodakaraensis (strain KOD1) - - - - - - 2260 - Pyrococcus - genus - - - - 29292 - PYRAB - Pyrococcus abyssi - species - - - - - 53953 - PYRHO - Pyrococcus horikoshii - species - - - - - - - 523850 - THEON - Thermococcus onnurineus (strain NA1) - - - - - - a_55 - - - 228908 - NANEQ - Nanoarchaeum equitans (strain Kin4-M) - - - - - 436308 - NITMS - Nitrosopumilus maritimus (strain SCM1) - - - - - - - 2301 - Thermoplasmatales - order - - - a_59 - - 2302 - Thermoplasma - genus - - - - 273075 - THEAC - Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) - - - - - 273116 - THEVO - Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / IFO 15438 / JCM 9571 / GSS1) - - - - - - 263820 - PICTO - Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) - - - - - - a_93 - - - 183924 - Thermoprotei - class - - - a_83 - - a_81 - - - 2267 - Thermoproteaceae - family - - - a_71 - - a_67 - - 2276 - Pyrobaculum - genus - - - a_65 - - - 340102 - PYRAR - Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) - - - - - 410359 - PYRCJ - Pyrobaculum calidifontis (strain JCM 11548 / VA1) - - - - - - 13773 - PYRAE - Pyrobaculum aerophilum - species - - - - - a_70 - - - 384616 - PYRIL - Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) - - - - - 444157 - THENV - Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) - Thermoproteus neutrophilus - - - - - - - 397948 - CALMQ - Caldivirga maquilingensis (strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167) - - - - - a_80 - - 118883 - Sulfolobaceae - family - - - a_78 - - 2284 - Sulfolobus - genus - - - a_76 - - - 2285 - SULAC - Sulfolobus acidocaldarius - species - - - - - 273063 - SULTO - Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) - - - - - - 2287 - SULSO - Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) - Sulfolobus solfataricus P2 - strain - - - - - - 399549 - METS5 - Metallosphaera sedula (strain ATCC 51363 / DSM 5348) - - - - - - - 56636 - AERPE - Aeropyrum pernix - species - - - - - a_90 - - a_88 - - a_86 - - - 399550 - STAMF - Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) - - - - - 368408 - THEPD - Thermofilum pendens (strain Hrk 5) - - - - - - 415426 - HYPBU - Hyperthermus butylicus (strain DSM 5456 / JCM 9403) - - - - - - 453591 - IGNH4 - Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) - - - - - - - 374847 - KORCO - Korarchaeum cryptofilum (strain OPF8) - - - - - - - - 2 - Bacteria - superkingdom - - - b_278 - - b_268 - - b_226 - - b_200 - - b_194 - - b_104 - - b_80 - - - 1224 - Proteobacteria - phylum - - - b_52 - - b_44 - - b_30 - - b_24 - - 1236 - Gammaproteobacteria - class - - - b_16 - - - 543 - Enterobacteriaceae - family - - - b_8 - - b_6 - - b_4 - - - 561 - Escherichia - genus - - - - 83333 - ECOLI - Escherichia coli (strain K12) - - - - - 83334 - ECO57 - Escherichia coli O157:H7 - - - - - - 623 - SHIFL - Shigella flexneri - species - - - - - - 90371 - SALTY - Salmonella typhimurium - - - - - - 632 - YERPE - Yersinia pestis - species - - - - - - 29488 - PHOLU - Photorhabdus luminescens - Xenorhabdus luminescens - species - - - - - b_15 - - b_13 - - 641 - Vibrionaceae - family - - - - 74109 - PHOPR - Photobacterium profundum - Photobacterium sp. (strain SS9) - species - - - - - 666 - VIBCH - Vibrio cholerae - species - - - - - - 318161 - SHEDO - Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) - - - - - - b_23 - - b_21 - - 286 - Pseudomonas - genus - - - b_19 - - - 220664 - PSEF5 - Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) - - - - - 205922 - PSEPF - Pseudomonas fluorescens (strain Pf0-1) - - - - - - 287 - PSEAE - Pseudomonas aeruginosa - species - - - - - - 290398 - CHRSD - Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) - - - - - - b_29 - - 28216 - Betaproteobacteria - class - - - - 159087 - DECAR - Dechloromonas aromatica (strain RCB) - - - - - 266264 - RALME - Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) - - - - - - b_43 - - b_41 - - b_35 - - 28216 - Betaproteobacteria - class - - - b_33 - - 206379 - Nitrosomonadaceae - family - - - - 915 - NITEU - Nitrosomonas europaea - species - - - - - 323848 - NITMU - Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) - - - - - - 36861 - THIDE - Thiobacillus denitrificans - species - - - - - b_40 - - 135613 - Chromatiales - order - - - b_38 - - 72276 - Ectothiorhodospiraceae - purple sulfur bacteria - family - - - - 187272 - ALHEH - Alkalilimnicola ehrlichei (strain MLHE-1) - - - - - 349124 - HALHL - Halorhodospira halophila (strain DSM 244 / SL1) - Ectothiorhodospira halophila (strain DSM 244 / SL1) - - - - - - 323261 - NITOC - Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) - - - - - - - 317025 - THICR - Thiomicrospira crunogena (strain XCL-2) - - - - - - b_51 - - 1236 - Gammaproteobacteria - class - - - b_47 - - - 135577 - IDILO - Idiomarina loihiensis - species - - - - - 446 - LEGPN - Legionella pneumophila - species - - - - - b_50 - - 32033 - Xanthomonadaceae - family - - - - 190486 - XANAC - Xanthomonas axonopodis pv. citri (strain 306) - Xanthomonas citri pv. citri str. 306 - - - - - 183190 - XYLFT - Xylella fastidiosa (strain Temecula1 / ATCC 700964) - - - - - - - b_71 - - 28211 - Alphaproteobacteria - class - - - b_67 - - b_65 - - b_61 - - 356 - Rhizobiales - order - - - b_57 - - 227290 - Rhizobium/Agrobacterium group - - - - 176299 - AGRT5 - Agrobacterium tumefaciens (strain C58 / ATCC 33970) - - - - - 347834 - RHIEC - Rhizobium etli (strain CFN 42 / ATCC 51251) - - - - - b_60 - - 41294 - Bradyrhizobiaceae - family - - - - 375 - BRAJA - Bradyrhizobium japonicum - species - - - - - 395960 - RHOPT - Rhodopseudomonas palustris (strain TIE-1) - - - - - - b_64 - - 31989 - Rhodobacteraceae - family - - - - 349101 - RHOS1 - Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) - - - - - 375451 - ROSDO - Roseobacter denitrificans (strain ATCC 33942 / OCh 114) - Erythrobacter sp. (strain OCh 114) - Roseobacter denitrificans - - - - - - - 155892 - CAUCR - Caulobacter crescentus - Caulobacter vibrioides - species - - - - - b_70 - - 204441 - Rhodospirillales - order - - - - 524 - ACICY - Acidiphilium cryptum - species - - - - - 1085 - RHORU - Rhodospirillum rubrum - species - - - - - - - b_79 - - b_77 - - 1224 - Proteobacteria - phylum - - - b_75 - - 712 - Pasteurellaceae - family - - - - 727 - HAEIN - Haemophilus influenzae - species - - - - - 747 - PASMU - Pasteurella multocida - species - - - - - - 487 - NEIME - Neisseria meningitidis - species - - - - - - 905 - ACIFE - Acidaminococcus fermentans - species - - - - - - b_103 - - b_91 - - 28221 - Deltaproteobacteria - class - - - b_87 - - b_83 - - - 84980 - DESPS - Desulfotalea psychrophila - species - - - - - 876 - DESDE - Desulfovibrio desulfuricans - species - - - - - - 56780 - SYNAS - Syntrophus aciditrophicus (strain SB) - - - - - b_90 - - 28231 - Geobacter - genus - - - - 28232 - GEOME - Geobacter metallireducens - species - - - - - 35554 - GEOSL - Geobacter sulfurreducens - species - - - - - - b_102 - - b_98 - - b_94 - - 31 - Myxococcaceae - family - - - - 290397 - ANADE - Anaeromyxobacter dehalogenans (strain 2CP-C) - - - - - 34 - MYXXA - Myxococcus xanthus - species - - - - - b_97 - - 57723 - Acidobacteria - phylum - - - - 204669 - KORVE - Koribacter versatilis (strain Ellin345) - Acidobacteria bacterium Ellin345 - Candidatus Koribacter versatilis Ellin345 - - - - - 332163 - SOLUS - Solibacter usitatus - species - - - - - - - 265606 - RHOBA - Rhodopirellula baltica - species - - - - - - - b_193 - - b_163 - - b_133 - - Chloroflexi & Actinobacteria - - - 201174 - Actinobacteria - phylum - - - - 2037 - Actinomycetales - order - - - b_115 - - - 266940 - KINRD - Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) - - - - - 378753 - KOCRD - Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) - - - - - 1032480 - MICPN - Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) - Microlunatus phosphovorus NM-1 - strain - - - - - 1902 - STRCO - Streptomyces coelicolor - species - - - - - 269800 - THEFY - Thermobifida fusca (strain YX) - - - - - - 85007 - Corynebacterineae - suborder - - - - 1763 - Mycobacterium - genus - - - - 1769 - MYCLE - Mycobacterium leprae - species - - - - - 1773 - MYCTU - Mycobacterium tuberculosis - species - - - - - - 306537 - CORJK - Corynebacterium jeikeium (strain K411) - - - - - 632772 - RHOOB - Rhodococcus opacus (strain B4) - strain - - - - - - - 266117 - RUBXD - Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) - - - - - - 200795 - Chloroflexi - GNS bacteria - Thermomicrobia - phylum - - - - 32061 - Chloroflexi (class) - Chloroflecales - Chloroflexus/Deinococcus group - class - - - - 1106 - Chloroflexaceae - filamentous anoxygenic phototrophic bacteria - family - - - - 1108 - CHLAU - Chloroflexus aurantiacus - species - - - - - 383372 - ROSCS - Roseiflexus castenholzii (strain DSM 13941 / HLO8) - species - - - - - - 65 - HERAU - Herpetosiphon aurantiacus - Herpetosiphon giganteus - species - - - - - - 479434 - SPHTD - Sphaerobacter thermophilus (strain DSM 20745 / S 6022) - strain - - - - - - b_132 - - 188787 - Deinococci - class - - - - 1298 - Deinococcus - genus - - - - 319795 - DEIGD - Deinococcus geothermalis (strain DSM 11300) - - - - - 1299 - DEIRA - Deinococcus radiodurans - species - - - - - - 300852 - THET8 - Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) - strain - - - - - - b_162 - - 1117 - Cyanobacteria - phylum - - - b_154 - - b_152 - - b_146 - - b_144 - - b_142 - - b_138 - - 1162 - Nostocaceae - family - - - b_136 - - - 240292 - ANAVT - Anabaena variabilis (strain ATCC 29413 / PCC 7937) - Anabaena flos-aquae (strain IUCC 1444) - strain - - - - - 28072 - NOSS7 - Nostoc sp. (strain ATCC 29411 / PCC 7524) - species - - - - - - 63737 - NOSP7 - Nostoc punctiforme (strain ATCC 29133 / PCC 73102) - strain - - - - - - 329726 - ACAM1 - Acaryochloris marina (strain MBIC 11017 - strain - - - - - - 449447 - MICAN - Microcystis aeruginosa (strain NIES-843) - - - - - - 1206 - TRIER - Trichodesmium erythraeum - species - - - - - - 1118 - Chroococcales - order - - - - 32046 - SYNEL - Synechococcus elongatus - species - - - - - 1111708 - SYNY3 - Synechocystis sp. (strain PCC 6803 / Kazusa) - - - - - - - 33072 - GLOVI - Gloeobacter violaceus - species - - - - - b_161 - - b_159 - - 1218 - Prochlorococcus - genus - - - b_157 - - - 1219 - PROMA - Prochlorococcus marinus - species - - - - - 59919 - PROMP - Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) - - - - - - 74547 - PROMM - Prochlorococcus marinus (strain MIT 9313) - - - - - - 64471 - SYNS3 - Synechococcus sp. (strain CC9311) - species - - - - - - - b_192 - - b_190 - - b_178 - - b_176 - - 191412 - Chlorobiaceae - family - - - b_170 - - b_166 - - - 331678 - CHLPB - Chlorobium phaeobacteroides (strain BS1) - - - - - 1102 - PROAE - Prosthecochloris aestuarii - species - - - - - b_169 - - 274493 - Chlorobium/Pelodictyon group - - - - 1100 - PELLU - Pelodictyon luteolum - species - - - - - 290318 - PROVI - Prosthecochloris vibrioformis (strain DSM 265) - Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 265) - Chlorobium phaeovibrioides (strain DSM 265) - - - - - - b_175 - - - 256319 - Chlorobaculum - genus - - - - 517417 - CHLP8 - Chlorobaculum parvum (strain NCIB 8327) - Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 263 / NCIB 8327) - - - - - 1097 - CHLTE - Chlorobium tepidum - species - - - - - - 340177 - CHLCH - Chlorobium chlorochromatii (strain CaD3) - - - - - - - 315277 - CHLTA - Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B) - - - - - b_189 - - 976 - Bacteroidetes - phylum - - - b_183 - - b_181 - - 49546 - Flavobacteriaceae - family - - - - 986 - FLAJO - Flavobacterium johnsoniae - Cytophaga johnsonae - species - - - - - 411154 - GRAFK - Gramella forsetii (strain KT0803) - - - - - - 269798 - CYTH3 - Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) - - - - - b_188 - - 171549 - Bacteroidales - order - - - b_186 - - 816 - Bacteroides - genus - - - - 817 - BACFR - Bacteroides fragilis - species - - - - - 818 - BACTN - Bacteroides thetaiotaomicron - species - - - - - - 837 - PORGI - Porphyromonas gingivalis - Bacteroides gingivalis - species - - - - - - - - 309807 - SALRD - Salinibacter ruber (strain DSM 13855 / M31) - - - - - - - b_199 - - b_197 - - Verrucomicrobia - - - - 349741 - AKKM8 - Akkermansia muciniphila (strain ATCC BAA-835) - - - - - 481448 - METI4 - Methylacidiphilum infernorum (isolate V4) - Methylokorus infernorum (strain V4) - - - - - - 44275 - LEPIC - Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni - - - - - - b_225 - - b_219 - - 1239 - Firmicutes - phylum - - - b_213 - - - 1385 - Bacillales - order - - - - 186817 - Bacillaceae - family - - - - 1386 - Bacillus - genus - - - - 86661 - Bacillus cereus group - - - - 1392 - BACAN - Bacillus anthracis - species - - - - - 572264 - BACC3 - Bacillus cereus (strain 03BB102) - strain - - - - - - 224308 - BACSU - Bacillus subtilis (strain 168) - Bacillus subtilis subsp. subtilis str. 168 - - - - - b_206 - - - 86665 - BACHD - Bacillus halodurans - species - - - - - 1462 - GEOKA - Geobacillus kaustophilus - species - - - - - - b_210 - - - 1639 - LISMO - Listeria monocytogenes - species - - - - - 1280 - STAAU - Staphylococcus aureus - species - - - - - - - 195103 - CLOP1 - Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) - - - - - Clostridia - - 186801 - Clostridia - class - - - b_218 - - b_216 - - 186814 - Thermoanaerobacteriaceae - family - - - - 246194 - CARHZ - Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) - - - - - 119072 - THETN - Thermoanaerobacter tengcongensis - species - - - - - - 49338 - DESHA - Desulfitobacterium hafniense - Desulfitobacterium frappieri - species - - - - - - 515619 - EUBR3 - Eubacterium rectale (strain ATCC 33656 / VPI 0990) - - - - - - b_224 - - 188709 - Thermotogaceae - family - - - b_222 - - - 381764 - FERNB - Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) - - - - - 416591 - THELT - Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) - - - - - - 2336 - THEMA - Thermotoga maritima - species - - - - - - - b_267 - - b_263 - - b_251 - - b_249 - - b_245 - - b_237 - - b_233 - - 31969 - Mollicutes - class - - - b_231 - - b_229 - - Mycoplasma - - - - 2097 - MYCGE - Mycoplasma genitalium - species - - - - - 2104 - MYCPN - Mycoplasma pneumoniae - species - - - - - - 2151 - MESFL - Mesoplasma florum - Acholeplasma florum - species - - - - - - 134821 - UREPA - Ureaplasma parvum - Ureaplasma urealyticum biotype 1 - species - - - - - b_236 - - 137 - Spirochaetaceae - family - - - - 139 - BORBU - Borrelia burgdorferi - Lyme disease spirochete - species - - - - - 160 - TREPA - Treponema pallidum - species - - - - - - b_244 - - b_242 - - 1113537 - Chlamydia/Chlamydophila group - - - b_240 - - - 83558 - CHLPN - Chlamydia pneumoniae - Chlamydophila pneumoniae - species - - - - - 264202 - CHLFF - Chlamydophila felis (strain Fe/C-56) - - - - - - 83560 - CHLMU - Chlamydia muridarum - species - - - - - - 785 - RICTY - Rickettsia typhi - species - - - - - - - 28211 - Alphaproteobacteria - class - - - - 38323 - BARHE - Bartonella henselae - Rochalimaea henselae - species - - - - - 198252 - PELUB - Pelagibacter ubique - species - - - - - 780 - Rickettsia - genus - - - - 391896 - RICB8 - Rickettsia bellii (strain OSU 85-389) - - - - - 452659 - RICRO - Rickettsia rickettsii (strain Iowa) - strain - - - - - - - - 263 - FRATU - Francisella tularensis - species - - - - - b_262 - - b_260 - - b_258 - - 186826 - Lactobacillales - order - - - b_256 - - 1300 - Streptococcaceae - family - - - b_254 - - 1301 - Streptococcus - genus - - - - 1313 - STRPN - Streptococcus pneumoniae - species - - - - - 1314 - STRPY - Streptococcus pyogenes - species - - - - - - 1360 - LACLA - Lactococcus lactis subsp. lactis - Streptococcus lactis - subspecies - - - - - - 1579 - LACAC - Lactobacillus acidophilus - species - - - - - - 216816 - BIFLO - Bifidobacterium longum - species - - - - - - 851 - FUSNU - Fusobacterium nucleatum - species - - - - - - b_266 - - 61434 - Dehalococcoides - genus - - - - 243164 - DEHE1 - Dehalococcoides ethenogenes (strain 195) - - - - - 216389 - DEHSB - Dehalococcoides sp. (strain BAV1) - species - - - - - - - b_277 - - 29547 - Epsilonproteobacteria - class - - - b_273 - - - 387092 - NITSB - Nitratiruptor sp. (strain SB155-2) - species - - - - - 387093 - SULNB - Sulfurovum sp. (strain NBC37-1) - species - - - - - b_276 - - 213849 - Campylobacterales - order - - - - 197 - CAMJE - Campylobacter jejuni - species - - - - - 357544 - HELPH - Helicobacter pylori (strain HPAG1) - - - - - - - - 224324 - AQUAE - Aquifex aeolicus (strain VF5) - strain - - - - - - \ No newline at end of file