From: Jim Procter <jprocter@issues.jalview.org>
Date: Wed, 21 Sep 2016 15:50:37 +0000 (+0100)
Subject: JAL-2189 JAL-2171 JAL-2214 JAL-1841 JAL-2215 release notes
X-Git-Tag: Release_2_10_0~39^2~13
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=105264824968177294afa03e53166cca38bcc8bc;p=jalview.git

JAL-2189 JAL-2171 JAL-2214 JAL-1841 JAL-2215 release notes
---

diff --git a/help/html/releases.html b/help/html/releases.html
index b183d36..51f86e1 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -55,6 +55,8 @@
             <li><!-- JAL-2164,JAL-1919,-->Jmol now primary parser for importing structure data to Jalview. Enables mmCIF and better PDB parsing.</li>
             <li><!-- JAL-192 --->Alignment ruler shows positions relative to reference sequence</li>
             <li><!-- JAL-2202 -->Position/residue shown in status bar when mousing over sequence associated annotation</li>
+            <li><!-- JAL-2171 -->Default RNA SS symbol to 'matching bracket' for manual entry</li>
+            <li><!-- JAL-2214 -->RNA Structure consensus indicates wc-only '()', canonical '[]' and invalid '{}' base pair populations for each column</li>
         </ul> <em>Application</em>
         <ul>
             <li><!-- JAL---></li>
@@ -96,6 +98,9 @@
             <li><!-- JAL-2146 -->Alignment column in status incorrectly shown as &quot;Sequence position&quot; when mousing over annotation</li>
             <li><!--  JAL-2099 -->Incorrect column numbers in ruler when hidden columns present</li>
             <li><!--  JAL-1577 -->Colour by RNA Helices not enabled when user created annotation added to alignment</li>
+            <li><!-- JAL-1841 -->RNA Structure consensus only computed for '()' base pair annotation</li>
+            <li><!-- JAL-2215, JAL-1841 -->Enabling 'Ignore Gaps' results in zero scores for all base pairs in RNA Structure Consensus</li>
+            
             
           </ul>
           <em>Application</em>
@@ -110,7 +115,7 @@
             <li><!--  JAL-1989  -->Hide columns not mirrored in complement view in a cDNA/Protein splitframe</li>
             <li><!--  JAL-1369 -->Cannot save/restore representative sequence from project when only one sequence is represented</li>
             <li><!-- JAL-2002 -->Disabled 'Best Uniprot Coverage' option in Structure Chooser</li>
-            
+            <li><!-- JAL-2215 -->Modifying 'Ignore Gaps' on consensus or structure consensus didn't refresh annotation panel</li>            
             <!--  may exclude, this is an external service stability issue  JAL-1941 /> RNA 3D structure not added via DSSR service</li> -->
           </ul>
           <em>Applet</em>