From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Thu, 13 Jun 2019 14:58:57 +0000 (+0100)
Subject: JAL-3303 ignore deletions when computing peptide variants
X-Git-Tag: Release_2_11_1_0~46
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=108953c611409ce47ef8b22c21a7854d10ca0fbd;p=jalview.git

JAL-3303 ignore deletions when computing peptide variants
---

diff --git a/src/jalview/datamodel/MappedFeatures.java b/src/jalview/datamodel/MappedFeatures.java
index 25f5ba4..4c63916 100644
--- a/src/jalview/datamodel/MappedFeatures.java
+++ b/src/jalview/datamodel/MappedFeatures.java
@@ -144,7 +144,7 @@ public class MappedFeatures
       for (String allele : alleles)
       {
         allele = allele.trim().toUpperCase();
-        if (allele.length() > 1)
+        if (allele.length() > 1 || "-".equals(allele))
         {
           continue; // multi-locus variant
         }