From: darolmar Date: Fri, 26 Sep 2014 14:27:07 +0000 (+0200) Subject: JAL-1355 X-Git-Tag: Release_2_8_2b1^2~50^2~3 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=10b903bf6b22d53e8920091efb2145d6b6a677ba;p=jalview.git JAL-1355 --- diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties index 5c0c9c5..50086dc 100644 --- a/resources/lang/Messages.properties +++ b/resources/lang/Messages.properties @@ -647,7 +647,7 @@ label.edit_sequence_name_description = Edit Sequence Name/Description label.spaces_converted_to_backslashes = Spaces have been converted to _ label.no_spaces_allowed_sequence_name = No spaces allowed in Sequence Name label.select_outline_colour = Select Outline Colour -label.web_browser_not_found_unix = Unixers: Couldn't find default web browser.\nAdd the full path to your browser in Preferences." +label.web_browser_not_found_unix = Unixers\: Couldn't find default web browser.\nAdd the full path to your browser in Preferences." label.web_browser_not_found = Web browser not found label.select_pdb_file_for = Select a PDB file for {0} label.html = HTML @@ -1064,13 +1064,13 @@ warn.input_is_too_big = Input is too big! warn.invalid_job_param_set = Invalid job parameter set! info.job_couldnt_be_run_server_doesnt_support_program = Job could not be run because the server doesn't support this program.\n{0} info.job_couldnt_be_run_exceeded_hard_limit = Job could not be run because it exceeded a hard limit on the server.\n{0} -info.job_couldnt_be_run_incorrect_param_setting = Job could not be run because some of the parameter settings are not supported by the server.\n{0}\nPlease check to make sure you have used the correct parameter set for this service!\n +info.job_couldnt_be_run_incorrect_param_setting = Job could not be run because some of the parameter settings are not supported by the server.\n{0}\nPlease check to make sure you have used the correct parameter set for this service\!\n info.no_jobs_ran = No jobs ran -info.failed_to_submit_prediction = Failed to submit the prediction:\n{0} {1} -info.invalid_jnet_job_result_data ={0}\n{1}\nInvalid JNet job result data!\n{2} +info.failed_to_submit_prediction = Failed to submit the prediction\:\n{0} {1} +info.invalid_jnet_job_result_data ={0}\n{1}\nInvalid JNet job result data\!\n{2} info.failed_to_submit_sequences_for_alignment = Failed to submit sequences for alignment.\nIt is most likely that there is a problem with the server.\nJust close the window\n info.alignment_object_method_notes = \nAlignment Object Method Notes\n -info.server_exception = \n{0} Server exception!\n{1} +info.server_exception = \n{0} Server exception\!\n{1} status.processing_commandline_args = Processing commandline arguments... status.das_features_being_retrived = DAS features being retrieved... status.searching_for_sequences_from = Searching for sequences from {0} @@ -1099,8 +1099,8 @@ status.fetching_db_refs = Fetching db refs label.font_doesnt_have_letters_defined = Font doesn't have letters defined\nso cannot be used\nwith alignment data label.error_loading_file_params = Error loading file {0} label.error_loading_jalview_file = Error loading Jalview file -warn.out_of_memory_when_action = Out of memory when {0}!!\nSee help files for increasing Java Virtual Machine memory. -warn.out_of_memory_loading_file = Out of memory loading file {0}!!\nSee help files for increasing Java Virtual Machine memory. +warn.out_of_memory_when_action = Out of memory when {0}\!\!\nSee help files for increasing Java Virtual Machine memory. +warn.out_of_memory_loading_file = Out of memory loading file {0}\!\!\nSee help files for increasing Java Virtual Machine memory. label.out_of_memory = Out of memory label.invalid_id_column_width = Invalid ID Column width warn.user_defined_width_requirements = The user defined width for the\nannotation and sequence ID columns\nin exported figures must be\nat least 12 pixels wide. @@ -1111,4 +1111,16 @@ warn.url_must_contain = Sequence URL must contain $SEQUENCE_ID$ or a regex $SEQU info.validate_jabaws_server = Validate JabaWS Server ?\n(Look in console output for results) label.test_server = Test Server? info.you_want_jalview_to_find_uniprot_accessions = Do you want Jalview to find\nUniprot Accession ids for given sequence names? -label.find_uniprot_accession_ids = Find Uniprot Accession Ids \ No newline at end of file +label.find_uniprot_accession_ids = Find Uniprot Accession Ids +label.new_sequence_fetcher = New Sequence Fetcher +label.additional_sequence_fetcher = Additional Sequence Fetcher +label.select_database_retrieval_source = Select Database Retrieval Source +label.overwrite_existing_file = Overwrite existing file? +label.file_already_exists = File exists +label.edit_jabaws_url = Edit JABAWS URL +label.add_jabaws_url = Add new JABAWS URL +label.news_from_jalview = News from http://www.jalview.org +label.cut_paste_alignmen_file = Cut & Paste Alignment File +label.enter_redundancy_thereshold = Enter the redundancy thereshold +label.select_dark_light_set_thereshold = Select a dark and light text colour, then set the threshold to
switch between colours, based on background colour +label.select_feature_colour = Select Feature Colour \ No newline at end of file diff --git a/src/MCview/PDBfile.java b/src/MCview/PDBfile.java index e112b2a..3dd567e 100755 --- a/src/MCview/PDBfile.java +++ b/src/MCview/PDBfile.java @@ -28,6 +28,7 @@ import java.awt.*; import jalview.analysis.AlignSeq; import jalview.datamodel.*; import jalview.io.FileParse; +import jalview.util.MessageManager; public class PDBfile extends jalview.io.AlignFile { diff --git a/src/jalview/appletgui/EmbmenuFrame.java b/src/jalview/appletgui/EmbmenuFrame.java index 3757415..c527308 100644 --- a/src/jalview/appletgui/EmbmenuFrame.java +++ b/src/jalview/appletgui/EmbmenuFrame.java @@ -20,6 +20,8 @@ */ package jalview.appletgui; +import jalview.util.MessageManager; + import java.awt.BorderLayout; import java.awt.Color; import java.awt.FlowLayout; diff --git a/src/jalview/appletgui/FeatureRenderer.java b/src/jalview/appletgui/FeatureRenderer.java index 11ca86a..29c3ac5 100644 --- a/src/jalview/appletgui/FeatureRenderer.java +++ b/src/jalview/appletgui/FeatureRenderer.java @@ -353,8 +353,8 @@ public class FeatureRenderer implements jalview.api.FeatureRenderer } } - String title = newFeatures ? "Create New Sequence Feature(s)" - : "Amend/Delete Features for " + sequences[0].getName(); + String title = newFeatures ? MessageManager.getString("label.create_new_sequence_features") + : MessageManager.formatMessage("label.amend_delete_features", new String[]{sequences[0].getName()}); final JVDialog dialog = new JVDialog(ap.alignFrame, title, true, 385, 240); @@ -901,7 +901,7 @@ public class FeatureRenderer implements jalview.api.FeatureRenderer return ((GraduatedColor) fc).getMaxColor(); } } - throw new Error(MessageManager.formatMessage("error.implementation_error_unrecognised_render_object_for_features_type", new String[]{fc.getClass(),featureType})); + throw new Error(MessageManager.formatMessage("error.implementation_error_unrecognised_render_object_for_features_type", new String[]{fc.getClass().getCanonicalName(),featureType})); } /** diff --git a/src/jalview/gui/BlogReader.java b/src/jalview/gui/BlogReader.java index c7835a5..7a1065d 100644 --- a/src/jalview/gui/BlogReader.java +++ b/src/jalview/gui/BlogReader.java @@ -331,7 +331,7 @@ public class BlogReader extends JPanel { createDialog(); bounds = new Rectangle(5, 5, 550, 350); - jd.initDialogFrame(me, false, false, "News from www.jalview.org", + jd.initDialogFrame(me, false, false, MessageManager.getString("label.news_from_jalview"), bounds.width, bounds.height); jd.frame.setModalExclusionType(ModalExclusionType.NO_EXCLUDE); Cache.log.info("Displaying news."); diff --git a/src/jalview/gui/Desktop.java b/src/jalview/gui/Desktop.java index a3cec98..123aed2 100644 --- a/src/jalview/gui/Desktop.java +++ b/src/jalview/gui/Desktop.java @@ -1039,7 +1039,7 @@ public class Desktop extends jalview.jbgui.GDesktop implements { CutAndPasteTransfer cap = new CutAndPasteTransfer(); cap.setForInput(viewport); - Desktop.addInternalFrame(cap, "Cut & Paste Alignment File", 600, 500); + Desktop.addInternalFrame(cap, MessageManager.getString("label.cut_paste_alignmen_file"), 600, 500); } /* diff --git a/src/jalview/gui/FeatureRenderer.java b/src/jalview/gui/FeatureRenderer.java index b04aa85..d2d9c9c 100644 --- a/src/jalview/gui/FeatureRenderer.java +++ b/src/jalview/gui/FeatureRenderer.java @@ -1024,7 +1024,7 @@ public class FeatureRenderer implements jalview.api.FeatureRenderer if (fcol instanceof Color) { Color col = JColorChooser.showDialog(Desktop.desktop, - "Select Feature Colour", ((Color) fcol)); + MessageManager.getString("label.select_feature_colour"), ((Color) fcol)); if (col != null) { fcol = col; diff --git a/src/jalview/gui/FeatureSettings.java b/src/jalview/gui/FeatureSettings.java index 577012b..1d8c116 100644 --- a/src/jalview/gui/FeatureSettings.java +++ b/src/jalview/gui/FeatureSettings.java @@ -1062,8 +1062,8 @@ public class FeatureSettings extends JPanel } }); this.add(tabbedPane, java.awt.BorderLayout.CENTER); - tabbedPane.addTab("Feature Settings", settingsPane); - tabbedPane.addTab("DAS Settings", dasSettingsPane); + tabbedPane.addTab(MessageManager.getString("label.feature_settings"), settingsPane); + tabbedPane.addTab(MessageManager.getString("label.das_settings"), dasSettingsPane); bigPanel.add(transPanel, java.awt.BorderLayout.SOUTH); transbuttons.add(optimizeOrder); transbuttons.add(invert); diff --git a/src/jalview/gui/IdPanel.java b/src/jalview/gui/IdPanel.java index 7f6ac85..39afd2c 100755 --- a/src/jalview/gui/IdPanel.java +++ b/src/jalview/gui/IdPanel.java @@ -29,6 +29,7 @@ import javax.swing.*; import jalview.datamodel.*; import jalview.io.SequenceAnnotationReport; +import jalview.util.MessageManager; import jalview.util.UrlLink; /** diff --git a/src/jalview/gui/JDatabaseTree.java b/src/jalview/gui/JDatabaseTree.java index 279662a..030e78a 100644 --- a/src/jalview/gui/JDatabaseTree.java +++ b/src/jalview/gui/JDatabaseTree.java @@ -86,7 +86,7 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener public JDatabaseTree(jalview.ws.SequenceFetcher sfetch) { - initDialogFrame(this, true, false, "Select Database Retrieval Source", + initDialogFrame(this, true, false, MessageManager.getString("label.select_database_retrieval_source"), 650, 490); /* * Dynamically generated database list will need a translation function from diff --git a/src/jalview/gui/OptsAndParamsPage.java b/src/jalview/gui/OptsAndParamsPage.java index 4a9b580..46ae664 100644 --- a/src/jalview/gui/OptsAndParamsPage.java +++ b/src/jalview/gui/OptsAndParamsPage.java @@ -855,7 +855,7 @@ public class OptsAndParamsPage } else { - throw new Error(MessageManager.formatMessage("error.invalid_value_for_option", new String[]{string,option})); + throw new Error(MessageManager.formatMessage("error.invalid_value_for_option", new String[]{string,option.getName()})); } } diff --git a/src/jalview/gui/RedundancyPanel.java b/src/jalview/gui/RedundancyPanel.java index 91f2450..1fcd875 100755 --- a/src/jalview/gui/RedundancyPanel.java +++ b/src/jalview/gui/RedundancyPanel.java @@ -159,7 +159,7 @@ public class RedundancyPanel extends GSliderPanel implements Runnable progress.setVisible(false); progress = null; - label.setText("Enter the redundancy threshold"); + label.setText(MessageManager.getString("label.enter_redundancy_thereshold")); slider.setVisible(true); applyButton.setEnabled(true); valueField.setVisible(true); diff --git a/src/jalview/gui/SequenceFetcher.java b/src/jalview/gui/SequenceFetcher.java index 4506eaa..35bc29a 100755 --- a/src/jalview/gui/SequenceFetcher.java +++ b/src/jalview/gui/SequenceFetcher.java @@ -219,8 +219,7 @@ public class SequenceFetcher extends JPanel implements Runnable private String getFrameTitle() { - return ((alignFrame == null) ? "New " : "Additional ") - + "Sequence Fetcher"; + return ((alignFrame == null) ? MessageManager.getString("label.new_sequence_fetcher") : MessageManager.getString("label.additional_sequence_fetcher")); } private void jbInit() throws Exception diff --git a/src/jalview/gui/TextColourChooser.java b/src/jalview/gui/TextColourChooser.java index bb2f295..6fe7660 100644 --- a/src/jalview/gui/TextColourChooser.java +++ b/src/jalview/gui/TextColourChooser.java @@ -68,9 +68,7 @@ public class TextColourChooser JPanel panel = new JPanel(); bigpanel.add(panel, BorderLayout.CENTER); bigpanel.add( - new JLabel( - "Select a dark and light text colour, then set the threshold to" - + "
switch between colours, based on background colour"), + new JLabel(MessageManager.getString("label.select_dark_light_set_thereshold")), BorderLayout.NORTH); panel.add(col1); panel.add(slider); diff --git a/src/jalview/gui/WsPreferences.java b/src/jalview/gui/WsPreferences.java index 1a5b9f8..876d157 100644 --- a/src/jalview/gui/WsPreferences.java +++ b/src/jalview/gui/WsPreferences.java @@ -274,7 +274,7 @@ public class WsPreferences extends GWsPreferences int sel = wsList.getSelectedRow(); if (sel > -1) { - String url = editUrl(wsUrls.elementAt(sel), "Edit JABAWS URL"); + String url = editUrl(wsUrls.elementAt(sel), MessageManager.getString("label.edit_jabaws_url")); if (url != null) { int present = wsUrls.indexOf(url); @@ -516,7 +516,7 @@ public class WsPreferences extends GWsPreferences @Override protected void newWsUrl_actionPerformed(ActionEvent e) { - String url = editUrl(null, "Add new JABAWS URL"); + String url = editUrl(null, MessageManager.getString("label.add_jabaws_url")); if (url != null) { if (!wsUrls.contains(url)) diff --git a/src/jalview/io/AppletFormatAdapter.java b/src/jalview/io/AppletFormatAdapter.java index 67559b9..ce15f0e 100755 --- a/src/jalview/io/AppletFormatAdapter.java +++ b/src/jalview/io/AppletFormatAdapter.java @@ -26,6 +26,7 @@ import java.util.List; import jalview.api.AlignViewportI; import jalview.datamodel.*; +import jalview.util.MessageManager; /** * A low level class for alignment and feature IO with alignment formatting diff --git a/src/jalview/io/JalviewFileChooser.java b/src/jalview/io/JalviewFileChooser.java index 470fd89..c84e542 100755 --- a/src/jalview/io/JalviewFileChooser.java +++ b/src/jalview/io/JalviewFileChooser.java @@ -205,7 +205,7 @@ public class JalviewFileChooser extends JFileChooser && getSelectedFile().exists()) { int confirm = JOptionPane.showConfirmDialog(parent, - "Overwrite existing file?", "File exists", + MessageManager.getString("label.overwrite_existing_file"), MessageManager.getString("label.file_already_exists"), JOptionPane.YES_NO_OPTION); if (confirm != JOptionPane.YES_OPTION) diff --git a/src/jalview/io/WSWUBlastClient.java b/src/jalview/io/WSWUBlastClient.java index 871c6d5..4f0d802 100755 --- a/src/jalview/io/WSWUBlastClient.java +++ b/src/jalview/io/WSWUBlastClient.java @@ -208,7 +208,7 @@ public class WSWUBlastClient imageIndex++; imageIndex %= 9; output.setFrameIcon(imageIcon[imageIndex]); - output.setTitle(MessageManager.formatMessage("label.blasting_for_unidentified_sequence_jobs_running", new String[]{jobsRunning})); + output.setTitle(MessageManager.formatMessage("label.blasting_for_unidentified_sequence_jobs_running", new String[]{Integer.valueOf(jobsRunning).toString()})); } catch (Exception ex) { } diff --git a/src/jalview/ws/jws2/MsaWSThread.java b/src/jalview/ws/jws2/MsaWSThread.java index 0d0f047..5e8cb98 100644 --- a/src/jalview/ws/jws2/MsaWSThread.java +++ b/src/jalview/ws/jws2/MsaWSThread.java @@ -726,7 +726,7 @@ class MsaWSThread extends AWS2Thread implements WSClientI j.setAllowedServerExceptions(0); wsInfo.appendProgressText(j.getJobnum(), - MessageMAnager.getString("info.failed_to_submit_sequences_for_alignment")); + MessageManager.getString("info.failed_to_submit_sequences_for_alignment")); } } } diff --git a/src/jalview/ws/jws2/ParameterUtils.java b/src/jalview/ws/jws2/ParameterUtils.java index e44fa6a..8916be9 100644 --- a/src/jalview/ws/jws2/ParameterUtils.java +++ b/src/jalview/ws/jws2/ParameterUtils.java @@ -20,6 +20,8 @@ */ package jalview.ws.jws2; +import jalview.util.MessageManager; + import java.net.MalformedURLException; import java.util.ArrayList; import java.util.HashSet; diff --git a/src/jalview/ws/jws2/dm/AAConSettings.java b/src/jalview/ws/jws2/dm/AAConSettings.java index 8ce4639..e78172e 100644 --- a/src/jalview/ws/jws2/dm/AAConSettings.java +++ b/src/jalview/ws/jws2/dm/AAConSettings.java @@ -26,6 +26,7 @@ import java.util.List; import compbio.metadata.Argument; import compbio.metadata.Option; +import jalview.util.MessageManager; import jalview.ws.jws2.JabaParamStore; import jalview.ws.jws2.JabaPreset; import jalview.ws.jws2.ParameterUtils; diff --git a/src/jalview/ws/rest/HttpResultSet.java b/src/jalview/ws/rest/HttpResultSet.java index 47ad3b4..5af6b32 100644 --- a/src/jalview/ws/rest/HttpResultSet.java +++ b/src/jalview/ws/rest/HttpResultSet.java @@ -26,6 +26,7 @@ import jalview.io.packed.DataProvider; import jalview.io.packed.ParsePackedSet; import jalview.io.packed.SimpleDataProvider; import jalview.io.packed.DataProvider.JvDataType; +import jalview.util.MessageManager; import jalview.ws.io.mime.JalviewMimeContentHandler; import java.io.BufferedReader; diff --git a/src/jalview/ws/rest/params/Tree.java b/src/jalview/ws/rest/params/Tree.java index 8af2071..2c58ed8 100644 --- a/src/jalview/ws/rest/params/Tree.java +++ b/src/jalview/ws/rest/params/Tree.java @@ -20,6 +20,7 @@ */ package jalview.ws.rest.params; +import jalview.util.MessageManager; import jalview.ws.params.OptionI; import jalview.ws.rest.InputType; import jalview.ws.rest.RestJob;