From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Wed, 14 Sep 2011 10:50:40 +0000 (+0100)
Subject: JAL-766 JAL-733 - new alignment->jmol associations are automatically used to colour... 
X-Git-Tag: Release_2_7~54
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=10e974a35e089a28c7802182f263755b9a8b8808;p=jalview.git

JAL-766 JAL-733 - new alignment->jmol associations are automatically used to colour structure
---

diff --git a/src/jalview/gui/AppJmolBinding.java b/src/jalview/gui/AppJmolBinding.java
index d15b9eb..3b915ae 100644
--- a/src/jalview/gui/AppJmolBinding.java
+++ b/src/jalview/gui/AppJmolBinding.java
@@ -127,8 +127,8 @@ public class AppJmolBinding extends jalview.ext.jmol.JalviewJmolBinding
   public void updateColours(Object source)
   {
     AlignmentPanel ap = (AlignmentPanel) source,topap;
-    // ignore events from unrelated or non-user interactive frames
-    if ((topap=appJmolWindow.getAlignmentPanelFor(ap.av.getAlignment()))==null || topap.alignFrame.getCurrentView() != ap.av || !appJmolWindow.isUsedforcolourby(ap))
+    // ignore events from panels not used to colour this view
+    if (!appJmolWindow.isUsedforcolourby(ap))
       return;
     if (!isLoadingFromArchive()) {
       colourBySequence(ap.av.getShowSequenceFeatures(), ap);