From: Jim Procter <jprocter@compbio.dundee.ac.uk>
Date: Sun, 23 Jun 2013 18:05:42 +0000 (+0100)
Subject: JAL-1230 update alignment state for annotation edits, and validate annotation panel... 
X-Git-Tag: Jalview_2_9~230^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=11528cae3c2e759a2a55ae1f9e748b13b32f4f75;p=jalview.git

JAL-1230 update alignment state for annotation edits, and validate annotation panel height to ensure any autocalculated annotation is made visible
---

diff --git a/src/jalview/appletgui/AnnotationPanel.java b/src/jalview/appletgui/AnnotationPanel.java
index f63cb76..154652d 100755
--- a/src/jalview/appletgui/AnnotationPanel.java
+++ b/src/jalview/appletgui/AnnotationPanel.java
@@ -253,10 +253,10 @@ public class AnnotationPanel extends Panel implements AwtRenderPanelI,
       }
     }
 
-    aa[activeRow].validateRangeAndDisplay();
+    av.getAlignment().validateAnnotation(aa[activeRow]);
 
-    adjustPanelHeight();
     ap.alignmentChanged();
+    adjustPanelHeight();
     repaint();
 
     return;
diff --git a/src/jalview/gui/AnnotationPanel.java b/src/jalview/gui/AnnotationPanel.java
index 169bff1..ed899b1 100755
--- a/src/jalview/gui/AnnotationPanel.java
+++ b/src/jalview/gui/AnnotationPanel.java
@@ -376,10 +376,10 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI,
         anot[index].displayCharacter = label;
       }
     }
-    aa[activeRow].validateRangeAndDisplay();
-
-    adjustPanelHeight();
+    av.getAlignment().validateAnnotation(aa[activeRow]);
     ap.alignmentChanged();
+    
+    adjustPanelHeight();
     repaint();
 
     return;