From: cmzmasek@gmail.com Date: Wed, 9 Mar 2011 02:51:30 +0000 (+0000) Subject: Edited wiki page PhyloBioRuby through web user interface. X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=11b285192163adf0b004a537167e20ba9309ddbd;p=jalview.git Edited wiki page PhyloBioRuby through web user interface. --- diff --git a/wiki/PhyloBioRuby.wiki b/wiki/PhyloBioRuby.wiki index 44136a6..ccc7d06 100644 --- a/wiki/PhyloBioRuby.wiki +++ b/wiki/PhyloBioRuby.wiki @@ -82,8 +82,6 @@ f.write(align.output(:phylipnon)) === Formatting of Individual Sequences === -_... to be done_ - !BioRuby can format molecular sequences in a variety of formats. Individual sequences can be formatted to (e.g.) Genbank format as shown in the following examples. @@ -101,14 +99,12 @@ The following symbols determine the output format: * `:genbank` for Genbank * `:embl` for EMBL * `:fasta` for FASTA - * `:fasta_ncbi` for - * `:raw` for - * `:fastq` for - * `:fastq_sanger` for - * `:fastq_solexa` for - * `:fastq_illumina` for - * `:fasta_numeric` for - * `:qual` for + * `:fasta_ncbi` for NCBI-type FASTA + * `:raw` for raw sequence + * `:fastq` for FASTQ (includes quality scores) + * `:fastq_sanger` for Sanger-type FASTQ + * `:fastq_solexa` for Solexa-type FASTQ + * `:fastq_illumina` for Illumina-type FASTQ == Calculating Multiple Sequence Alignments ==