From: Jim Procter <jprocter@issues.jalview.org>
Date: Fri, 17 Nov 2017 13:51:25 +0000 (+0000)
Subject: JAL-2698 what’s new and release notes
X-Git-Tag: Release_2_10_3b1~15
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=11ca0240a5792724d5e890de9fbd63cb2f11093a;p=jalview.git

JAL-2698 what’s new and release notes
---

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index 7ba4ee5..20dd8db 100755
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -24,7 +24,6 @@
 	<tocitem text="Jalview Documentation" target="home" expand="true">
 			<tocitem text="What's new" target="new" expand="true">
 				<tocitem text="Latest Release Notes" target="release"/>
-        
 		</tocitem>
 		
 		<tocitem text="Editing Alignments" target="edit" />
diff --git a/help/html/releases.html b/help/html/releases.html
index 8dad7eb..3e701f9 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -148,23 +148,16 @@ li:before {
             <li><!-- JAL-2811 -->Double residue highlights in cursor mode if new selection moves alignment window</li>
             <li><!-- JAL-2837,JAL-2840 -->Alignment vanishes when using arrow key in cursor mode to pass hidden column marker</li>          
            </ul>
-          <strong><em>Applet</em></strong><br/>
+          ><em>Applet</em><br/>
            <ul>
             <li><!-- JAL-2687 -->Concurrent modification exception when closing alignment panel</li> 
           </ul>
-          <strong><em>BioJSON</em></strong><br/>
+          <em>BioJSON</em><br/>
           <ul>
           <li>
             <!-- JAL-2546 -->BioJSON export does not preserve non-positional features
           </li>
           </ul>
-          <strong>Known Java 9 Issues</strong>
-          <ul>
-            <li><!-- JAL-2902 -->Groovy Console very slow to open and is 
-            not responsive when entering characters (Webstart, Java 9.01, 
-            OSX 10.10)
-            </li>
-          </ul>
           <strong>New Known Issues</strong>
           <ul>
           <li><!-- JAL-2541 -->Delete/Cut selection doesn't relocate sequence features correctly (for many previous versions of Jalview)</li>
@@ -172,6 +165,13 @@ li:before {
           <li><!-- JAL-2791 -->Select columns containing feature ignores graduated colour threshold</li>
           <li><!-- JAL-2822,JAL-2823 -->Edit sequence operation doesn't always preserve numbering and sequence features</li>
           </ul>
+          <strong>Known Java 9 Issues</strong>
+          <ul>
+            <li><!-- JAL-2902 -->Groovy Console very slow to open and is 
+            not responsive when entering characters (Webstart, Java 9.01, 
+            OSX 10.10)
+            </li>
+          </ul>
           </div>
       </td>
     </tr>
diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html
index d92f26b..6901f61 100755
--- a/help/html/whatsNew.html
+++ b/help/html/whatsNew.html
@@ -33,22 +33,24 @@
     the highlights are below.
   </p>
   <ul>
-    <li>Faster import and more responsive UI when working with wide alignments and handling hundreds and thousands of sequence features</li>
-    <li> 
-    <li>Improved usability with <a href="features/pdbsequencefetcher.html">PDB</a> and 
-    <a href="features/uniprotsequencefetcher.html">UniProt</a> Free Text Search
-      dialog, and new tab for retrieval of sequences for lists of IDs.</li>
-      <li>Short names assigned to sequences retrieved from UniProt</li> 
+    <li>Faster and more responsive UI when importing and working
+      with wide alignments and handling hundreds and thousands of
+      sequence features</li>
+    <li>Improved usability with <a
+      href="features/pdbsequencefetcher.html">PDB</a> and <a
+      href="features/uniprotsequencefetcher.html">UniProt</a> Free Text
+      Search dialog, and new tab for retrieval of sequences for lists of
+      IDs.
+    </li>
+    <li>Short names assigned to sequences retrieved from UniProt</li>
   </ul>
   <p>
     <strong><a name="experimental">Experimental Features</a></strong>
   </p>
   <p>
-    This release of Jalview introduces an <em>Experimental Features</em>
-    option in the Jalview Desktop's <em>Tools</em> menu that allows you
-    to try out features that are still in development. To access the
-    experimental features below - first enable the <strong>Tools&#8594;Enable
-      Experimental Features</strong> option, and then restart Jalview.
+    Remember, please enable the <em>Experimental Features</em> option in
+    the Jalview Desktop's <em>Tools</em> menu, and then restart Jalview
+    if you want to try out features below:
   </p>
   <ul>
     <li><em>Annotation transfer between Chimera and Jalview</em><br />Two