From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Mon, 6 Jul 2020 09:05:25 +0000 (+0100)
Subject: JAL-3570 updated external help links
X-Git-Tag: Release_2_11_1_1~22^2~16
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=11ec08ca03dcabaa771568d0a001f36d0a01ce64;p=jalview.git

JAL-3570 updated external help links
---

diff --git a/help/help/html/index.html b/help/help/html/index.html
index 36ed33a..442c508 100755
--- a/help/help/html/index.html
+++ b/help/help/html/index.html
@@ -45,7 +45,7 @@
   <p>
     For more information, you might also want to take a look at the
     documentation section of the Jalview website (<a
-      href="http://www-test.jalview.org/about/documentation">http://www.jalview.org/about/documentation</a>).
+      href="http://www.jalview.org/about/documentation">http://www.jalview.org/about/documentation</a>).
   </p>
   <p>
     If you are using the Jalview Desktop application and are looking for
diff --git a/help/help/html/webServices/AACon.html b/help/help/html/webServices/AACon.html
index 5cec67d..52cddb2 100644
--- a/help/help/html/webServices/AACon.html
+++ b/help/help/html/webServices/AACon.html
@@ -32,7 +32,7 @@
       Function, and Genetics</em> 43(2): 227-241. <a
       href="http://www.ncbi.nlm.nih.gov/pubmed/12112692">PubMed</a>
     or available on the <a
-      href="http://valdarlab.unc.edu/publications.html">Valdar
+      href="http://valdarlab.unc.edu/publications">Valdar
       Group publications page</a>), but the SMERFs score was developed later
     and described by Manning et al. in 2008 (<a
       href="http://www.biomedcentral.com/1471-2105/9/51">BMC
diff --git a/help/help/html/webServices/msaclient.html b/help/help/html/webServices/msaclient.html
index d627c66..472bda0 100644
--- a/help/help/html/webServices/msaclient.html
+++ b/help/help/html/webServices/msaclient.html
@@ -58,7 +58,7 @@
     <ul>
       <li><a href="http://www.clustal.org/omega">Clustal Omega</a> (version 1.2.4)</li>
       <li><a href="http://www.clustal.org/clustal2">ClustalW</a> (version 2.1)</li>
-      <li><a href="http://align.bmr.kyushu-u.ac.jp/mafft/software/">Mafft</a> (version 7.310)</li>
+      <li><a href="https://mafft.cbrc.jp/alignment/software/index.html">Mafft</a> (version 7.310)</li>
       <li><a href="http://www.drive5.com/muscle">Muscle</a> (version 3.8.31)</li>
       <li><a href="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html">T-coffee</a> (version 11.00.8cbe486)</li>
       <li><a href="http://probcons.stanford.edu/">Probcons</a> (version 1.12)</li>