From: Mateusz Warowny <mmzwarowny@dundee.ac.uk>
Date: Tue, 19 Oct 2021 13:39:50 +0000 (+0200)
Subject: JAL-3878 Fix sequences not being gathered when submitting without gaps.
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=131d16578bcde4ad83d8d5fbbed9a47f0f2b9275;hp=5c69e35471d1a4c0343ab0d8e13413269fbfce92;p=jalview.git

JAL-3878 Fix sequences not being gathered when submitting without gaps.
---

diff --git a/src/jalview/ws2/operations/AnnotationServiceWorker.java b/src/jalview/ws2/operations/AnnotationServiceWorker.java
index d59fbdf..10fc728 100644
--- a/src/jalview/ws2/operations/AnnotationServiceWorker.java
+++ b/src/jalview/ws2/operations/AnnotationServiceWorker.java
@@ -243,6 +243,7 @@ public class AnnotationServiceWorker implements PollableAlignCalcWorkerI
           String sqstring = sq.getSequenceAsString(start, end + 1);
           seq = new Sequence(newName, 
               AlignSeq.extractGaps(jalview.util.Comparison.GapChars, sqstring));
+          seqs.add(seq);
           // for annotation need to also record map to sequence start/end
           // position in range
           // then transfer back to original sequence on return.