From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Mon, 8 Aug 2016 16:16:36 +0000 (+0100)
Subject: JAL-1577 rebuild menus when secondary structure manually updated
X-Git-Tag: Release_2_10_0~70^2~16
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=1563da15a9d7eef4b88abbfaf8efa1868d69d236;p=jalview.git

JAL-1577 rebuild menus when secondary structure manually updated
---

diff --git a/src/jalview/gui/AnnotationPanel.java b/src/jalview/gui/AnnotationPanel.java
index bb311ef..60c182e 100755
--- a/src/jalview/gui/AnnotationPanel.java
+++ b/src/jalview/gui/AnnotationPanel.java
@@ -351,7 +351,7 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI,
       }
     }
     else
-    // HELIX OR SHEET
+    // HELIX, SHEET or STEM
     {
       char type = 0;
       String symbol = "\u03B1";
@@ -412,9 +412,10 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI,
 
       }
     }
+
     av.getAlignment().validateAnnotation(aa[activeRow]);
     ap.alignmentChanged();
-
+    ap.alignFrame.setMenusForViewport();
     adjustPanelHeight();
     repaint();