From: jprocter <Jim Procter>
Date: Tue, 24 May 2005 09:08:13 +0000 (+0000)
Subject: formatting.
X-Git-Tag: Release_2_0~217
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=15acf4db2949be30f3aabf2916b6609b19e8afb3;p=jalview.git

formatting.
---

diff --git a/help/html/calculations/sorting.html b/help/html/calculations/sorting.html
index 0d605f8..c61481f 100755
--- a/help/html/calculations/sorting.html
+++ b/help/html/calculations/sorting.html
@@ -6,34 +6,35 @@
 <p><strong>Sorting Sequences</strong></p>
 <p>Any group of selected sequences may be reordered by pressing the
 up or down arrow keys. The whole alignment may also be reordered by
-the use of the functions in the Sort menu (Calculate->Sort):
+the use of the functions in the Sort menu (<em>Calculate->Sort</em>):
 </p>
 <ul>
-<li><strong>Sort by ID</strong>
+<li><p><strong>Sort by ID</strong></p>
 <p>Orders the sequences by the alphanumeric (0-9A-Za-z)
-precedence of their names.</p>
+precedence of their names.</p><p>
 </li>
-<li><strong>Sort by Group</string>
-<p>Places sequences in the same group adjacent to eachother.</p>
+<li><p><strong>Sort by Group</strong></p>
+<p>Places sequences in the same group adjacent to eachother.</p><p>
 </li>
-<li><strong>Sort by Pairwise Identity</strong> 
+<li><p><strong>Sort by Pairwise Identity</strong></p>
 <p>Places pairs of sequences together that align with the greatest
 fraction of conserved residues. 
-</p>
-</li><strong>Sort by Tree Order</strong>
+</p><p>
+</li>
+<li><p><strong>Sort by Tree Order</strong></p>
 <p>The leaf ordering of a particular phylogenetic tree is used to
 order the sequences corresponding to those leaves in the
 alignment.<br>
 If a tree has been calculated from or associated with the current
-alignment, its name will appear in the submenu 'Sort->By Tree Order->'.<p>
+alignment, its name will appear in the submenu <em>Sort-&gt;By Tree Order</em>.</p><p>
 </li>
-<li><strong>Sort by alignment ordering</strong>
+<li><p><strong>Sort by alignment ordering</strong></p>
 <p>Multiple alignment methods often order the sequences in their
 alignments by some measure of sequence identity.<br>
-If the current alignment has been generated by one of the Jalview
+If the current alignment has been generated by one of Jalview's
 alignment web services, the alignment ordering can be recovered by
-its corresponding entry in the 'Sort->By ..' menu.
-</p>
+its corresponding entry in the Sort menu.
+</p><p>
 </li>
 </ul>
 <p><strong>Reversing the Order</strong></p>