From: jprocter <Jim Procter>
Date: Mon, 22 Aug 2005 14:19:25 +0000 (+0000)
Subject: comment on WORD_SEP values
X-Git-Tag: Release_2_04~32
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=15af442616b10419a3ec3eb080f8378879688fd1;p=jalview.git

comment on WORD_SEP values
---

diff --git a/src/jalview/analysis/SequenceIdMatcher.java b/src/jalview/analysis/SequenceIdMatcher.java
index f4f305b..9d33996 100755
--- a/src/jalview/analysis/SequenceIdMatcher.java
+++ b/src/jalview/analysis/SequenceIdMatcher.java
@@ -146,6 +146,8 @@ public class SequenceIdMatcher
     /**
      * Characters that define the end of a unique sequence ID at
      * the beginning of an arbitrary ID string
+     * JBPNote: This is a heuristic that will fail for arbritrarily extended sequence id's
+     * (like portions of an aligned set of repeats from one sequence)
      */
     private String WORD_SEP="~. |#\\/<>!\"£$%^*)}[@',?";