From: TZVanaalten <TZVanaalten@LS30916.ad.lifesci.dundee.ac.uk>
Date: Thu, 24 Aug 2017 13:19:31 +0000 (+0100)
Subject: JAL-2629 hmmsearch/build/align no longer run after cancelling
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=15c83d4dfaf421e7d464b65515b3e1a9f058f2f3;p=jalview.git

JAL-2629 hmmsearch/build/align no longer run after cancelling
---

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index d1d8a61..38e9423 100644
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -1048,8 +1048,10 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
     ParamDatastoreI store = new HMMERParamStore("hmmalign");
     WsJobParameters params = new WsJobParameters(new JFrame(), store, set,
             args);
-    params.showRunDialog();
-    new Thread(new HMMBuildThread(this, params.getJobParams())).start();
+    if (params.showRunDialog())
+    {
+      new Thread(new HMMBuildThread(this, params.getJobParams())).start();
+    }
     alignPanel.repaint();
 
   }
@@ -1067,9 +1069,11 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
     ParamDatastoreI store = new HMMERParamStore("hmmalign");
     WsJobParameters params = new WsJobParameters(new JFrame(), store, set,
             args);
-    params.showRunDialog();
-    new Thread(new HMMAlignThread(this, true, params.getJobParams()))
+    if (params.showRunDialog())
+    {
+      new Thread(new HMMAlignThread(this, true, params.getJobParams()))
             .start();
+    }
     alignPanel.repaint();
   }
 
@@ -1085,9 +1089,11 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
     ParamDatastoreI store = new HMMERParamStore("hmmsearch");
     WsJobParameters params = new WsJobParameters(new JFrame(), store, set,
             args);
-    params.showRunDialog();
-    new Thread(new HMMSearchThread(this, true, params.getJobParams()))
+    if (params.showRunDialog())
+    {
+      new Thread(new HMMSearchThread(this, true, params.getJobParams()))
             .start();
+    }
     alignPanel.repaint();
   }