From: Mateusz Warowny <mmzwarowny@dundee.ac.uk>
Date: Thu, 2 Sep 2021 15:11:35 +0000 (+0200)
Subject: Add RNAalifold service instance to slivka web services.
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=171426bbaca3ec0ff275e54981c917cbca2f012a;p=jalview.git

Add RNAalifold service instance to slivka web services.
---

diff --git a/src/jalview/ws/slivkaws/RNAalifoldServiceInstance.java b/src/jalview/ws/slivkaws/RNAalifoldServiceInstance.java
new file mode 100644
index 0000000..7940d06
--- /dev/null
+++ b/src/jalview/ws/slivkaws/RNAalifoldServiceInstance.java
@@ -0,0 +1,23 @@
+package jalview.ws.slivkaws;
+
+import jalview.util.MessageManager;
+import jalview.ws.uimodel.AlignAnalysisUIText;
+import uk.ac.dundee.compbio.slivkaclient.SlivkaClient;
+import uk.ac.dundee.compbio.slivkaclient.SlivkaService;
+
+public class RNAalifoldServiceInstance
+        extends SlivkaAnnotationServiceInstance
+{
+  public RNAalifoldServiceInstance(SlivkaClient client,
+          SlivkaService service, String category)
+  {
+    super(client, service, category);
+    setAlignAnalysisUI(new AlignAnalysisUIText(getName(),
+            RNAalifoldServiceInstance.class,
+            "Slivka.RNAalifold", true, false, true, true, false, 2,
+            MessageManager.getString("label.rnalifold_calculations"),
+            MessageManager.getString("tooltip.rnalifold_calculations"),
+            MessageManager.getString("label.rnalifold_settings"),
+            MessageManager.getString("tooltip.rnalifold_settings")));
+  }
+}
diff --git a/src/jalview/ws/slivkaws/SlivkaWSDiscoverer.java b/src/jalview/ws/slivkaws/SlivkaWSDiscoverer.java
index 50fa2d6..8ae9d14 100644
--- a/src/jalview/ws/slivkaws/SlivkaWSDiscoverer.java
+++ b/src/jalview/ws/slivkaws/SlivkaWSDiscoverer.java
@@ -115,6 +115,10 @@ public class SlivkaWSDiscoverer implements WSDiscovererI
           {
             switch (path[path.length - 1].toLowerCase())
             {
+            case "rna secondary structure prediction":
+              newInstance = new RNAalifoldServiceInstance(client,
+                      service, "Secondary Structure Prediction");
+              break;
             case "sequence alignment analysis (conservation)":
               newInstance = new SlivkaAnnotationServiceInstance(client,
                       service, Category.CATEGORY_CONSERVATION);