From: amwaterhouse <Andrew Waterhouse>
Date: Mon, 18 Jul 2005 13:47:32 +0000 (+0000)
Subject: Copy seq ordering bug fixed
X-Git-Tag: Release_2_02~2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=17837bcd5396404a52d6ba5724119a510eb2e51d;p=jalview.git

Copy seq ordering bug fixed
---

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index d320dc5..caa0321 100755
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -300,7 +300,7 @@ public class AlignFrame
                              seq.findPosition(sg.getStartRes()) + "\t"
                              + seq.findPosition(sg.getEndRes()) + "\t"
                              +
-                             sg.getSequenceAt(i).getSequence(sg.getStartRes(),
+                             seq.getSequence(sg.getStartRes(),
           sg.getEndRes() + 1) + "\n");
     }
 
diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index cbbc635..3ea7ed0 100755
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -545,7 +545,7 @@ public class AlignFrame extends GAlignFrame
             buffer.append(seq.getName() + "\t" +
                 seq.findPosition(sg.getStartRes()) + "\t" +
                 seq.findPosition(sg.getEndRes()) + "\t" +
-                sg.getSequenceAt(i).getSequence(sg.getStartRes(),
+                seq.getSequence(sg.getStartRes(),
                     sg.getEndRes() + 1) + "\n");
         }