From: tcofoegbu <tcnofoegbu@dundee.ac.uk>
Date: Thu, 24 Mar 2016 15:56:55 +0000 (+0000)
Subject: JAL-1479 Commented out debug sysout's for SiftsClient
X-Git-Tag: Release_2_10_0~283
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=178988bd18840c0c95432bf8209c014532337eeb;p=jalview.git

JAL-1479 Commented out debug sysout's for SiftsClient
---

diff --git a/src/jalview/ws/sifts/SiftsClient.java b/src/jalview/ws/sifts/SiftsClient.java
index ef6df43..e04bbb7 100644
--- a/src/jalview/ws/sifts/SiftsClient.java
+++ b/src/jalview/ws/sifts/SiftsClient.java
@@ -457,7 +457,7 @@ public class SiftsClient implements SiftsClientI
   {
     ArrayList<Integer> omitNonObserved = new ArrayList<Integer>();
     int nonObservedShiftIndex = 0;
-    System.out.println("Generating mappings for : " + entityId);
+    // System.out.println("Generating mappings for : " + entityId);
     Entity entity = null;
     entity = getEntityById(entityId);
     String originalSeq = AlignSeq.extractGaps(
@@ -492,8 +492,8 @@ public class SiftsClient implements SiftsClientI
     for (Segment segment : segments)
     {
       segStartEnd = segment.getStart() + " - " + segment.getEnd();
-      System.out.println("Mappging segments : " + segment.getSegId() + "\\"
-              + segStartEnd);
+      // System.out.println("Mapping segments : " + segment.getSegId() + "\\"
+      // + segStartEnd);
       List<Residue> residues = segment.getListResidue().getResidue();
       for (Residue residue : residues)
       {
@@ -772,8 +772,8 @@ public class SiftsClient implements SiftsClientI
     Arrays.sort(keys);
     int firstIndex = keys[0];
     int lastIndex = keys[keys.length - 1];
-    System.out.println("Min value " + firstIndex);
-    System.out.println("Max value " + lastIndex);
+    // System.out.println("Min value " + firstIndex);
+    // System.out.println("Max value " + lastIndex);
     for (int x = firstIndex; x <= lastIndex; x++)
     {
       if (!resNumMap.containsKey(x) && !omitNonObserved.contains(x))
@@ -862,8 +862,8 @@ public class SiftsClient implements SiftsClientI
       ++count;
     }
     Arrays.sort(sPojo, Collections.reverseOrder());
-    System.out.println("highest matched entity : " + sPojo[0].entityId);
-    System.out.println("highest matched pid : " + sPojo[0].pid);
+    // System.out.println("highest matched entity : " + sPojo[0].entityId);
+    // System.out.println("highest matched pid : " + sPojo[0].pid);
 
     if (sPojo[0].entityId != null)
     {