From: Natasha Sherstneva <n.shertneva@gmail.com>
Date: Tue, 26 Nov 2013 09:24:09 +0000 (+0000)
Subject: PROT-7 fixed a problem with reportProteinSequence
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=18bbe3b536b077b872ec703660b52784a7ee2e0d;p=proteocache.git

PROT-7 fixed a problem with reportProteinSequence
---

diff --git a/server/compbio/listeners/ServletSequenceProtein.java b/server/compbio/listeners/ServletSequenceProtein.java
index ef7353f..84af1b8 100644
--- a/server/compbio/listeners/ServletSequenceProtein.java
+++ b/server/compbio/listeners/ServletSequenceProtein.java
@@ -35,11 +35,11 @@ public class ServletSequenceProtein extends HttpServlet {
 		if (search.equals("Search counter")) {
 			List<DataBase> r = cr.readProteinByCounter(counter);
 	 		request.setAttribute("results", r);
-			System.out.println ("Search counter: " + r.size() + " proteins found");
+	//		System.out.println ("Search counter: " + r.size() + " proteins found");
 		} else {
 			List<DataBase> r = cr.readProteins(prot, flag);
 			request.setAttribute("results", r);
-			System.out.println ("Search sequence: " + r.size() + " proteins found");
+		//	System.out.println ("Search sequence: " + r.size() + " proteins found");
 		}
 		final long endTime = System.currentTimeMillis();
 		request.setAttribute("timeExecution", (endTime - startTime));
diff --git a/website/ReportSequenceProtein.jsp b/website/ReportSequenceProtein.jsp
index b7632d7..634cd33 100644
--- a/website/ReportSequenceProtein.jsp
+++ b/website/ReportSequenceProtein.jsp
@@ -1,4 +1,5 @@
 <%@page import="java.util.ArrayList"%>
+<%@ page trimDirectiveWhitespaces="true"%>
 <%@ taglib uri="http://java.sun.com/jsp/jstl/core" prefix="c"%>
 <%@ taglib uri="http://java.sun.com/jsp/jstl/functions" prefix="fn"%>
 <%@ taglib uri="http://java.sun.com/jsp/jstl/fmt" prefix="fmt"%>
@@ -66,9 +67,7 @@
 								<c:forEach items="${res.subProt}" var="seq">
 									<c:choose>
 										<c:when test="${fn:contains(seq, prot)}">
-											<span style="background-color: blue">${seq}</span>
-										</c:when>
-										<c:otherwise>${seq}</c:otherwise>
+											<span style="background-color: blue">${seq}</span></c:when><c:otherwise>${seq}</c:otherwise>
 									</c:choose>
 								</c:forEach>
 							</td>