From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Sat, 16 Nov 2013 00:55:47 +0000 (+0000)
Subject: inprogress
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=18f6c64d655d5f9cc321c689e1fec82067d849f3;p=jalview.git

inprogress
---

diff --git a/forester/ruby/evoruby/lib/evo/tool/phylogenies_decorator.rb b/forester/ruby/evoruby/lib/evo/tool/phylogenies_decorator.rb
index ae2d980..b2d5a87 100644
--- a/forester/ruby/evoruby/lib/evo/tool/phylogenies_decorator.rb
+++ b/forester/ruby/evoruby/lib/evo/tool/phylogenies_decorator.rb
@@ -166,7 +166,8 @@ module Evoruby
           log << counter.to_s + ': ' + phylogeny_file + ' -> ' +  outfile + NL
 
           phylogeny_id = get_id( phylogeny_file )
-
+          puts "id:" + phylogeny_id
+          
           ids_mapfile_name = nil
           domains_mapfile_name = nil
           seqs_file_name = nil
@@ -251,8 +252,6 @@ module Evoruby
              file =~ /^#{phylogeny_id}#{suffix_pattern}$/ )
           matching_files << file
         end
-       
-       
       }
     
 
@@ -278,7 +277,6 @@ module Evoruby
              file =~ /^#{phylogeny_id}.+\d$/ )
           matching_files << file
         end
-
       }
 
       if matching_files.length < 1